Browse
Submit Data
Databases
API
Help

Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

41 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Bulk tissue RNA-seq of different sea lamprey (Petromyzon marinus) organs

ABSTRACT: Strand-specific RNA-seq libraries from different sea lamprey tissues (brain, heart, liver, kidney, ovary, testis) were produced in order to enhance the genome annotation for protein coding genes.

INSTRUMENT(S): Illumina HiSeq 2500

ORGANISM(S): Petromyzon marinus

SUBMITTER: Henrik Kaessmann

PROVIDER: E-MTAB-11085 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

scRNA-seq of sea lamprey (Petromyzon marinus) brain regions

Project description:scRNA-seq was used in order to produce a cell type atlas of the larval and adult sea lamprey (Petromyzon marinus) brain. This resource enabled us to reveal the cell type composition and molecular organization of a representative of a lineage (i.e., the cyclostomes) that diverged from the rest of vertebrates around 500 million years ago, and lays the foundations for a better comprehension of vertebrate brain evolution

2021-12-13 | E-MTAB-11087 | biostudies-arrayexpress

Gene expression analysis of developing Sea Lamprey (Petromyzon marinus)

Project description:This project is designed to measure changes in gene expression during sea lamprey development RNA was extracted from sea lamprey embryos at 1, 2, 2.5, 3, 4, and 5 days post-fertilization and used to generate RNAseq data

2016-06-28 | E-GEOD-76037 | biostudies-arrayexpress

Gene expression analysis of developing Sea Lamprey (Petromyzon marinus)

Project description:This project is designed to measure changes in gene expression during sea lamprey development

2016-06-28 | GSE76037 | GEO

Maternal to paternal epigenome reprogramming during early sea lamprey (Petromyzon marinus) development (BioCAP)

Project description:Maternal to paternal epigenome reprogramming during early sea lamprey (Petromyzon marinus) development

2023-05-26 | GSE220551 | GEO

Nanostring nCounter expression analysis of sea lamprey embryos and adult testes (Petromyzon marinus)

Project description:This project is designed to measure changes in gene expression during sea lamprey development and in the adult germline RNA was extracted in biological triplicate from sea lamprey embryos at 1, 2, 2.5, 3, 4, and 5 days post-fertilization and in technical replicates from adult testes using trizol extraction. RNA was analyzed on the Nanostring nCounter gene expression assay to measure changes in gene expression across developmental time points and in adult testes

2016-10-21 | E-GEOD-76064 | biostudies-arrayexpress

Maternal to paternal epigenome reprogramming during early sea lamprey (Petromyzon marinus) development (Bisulfite-Seq)

Project description:Maternal to paternal epigenome reprogramming during early sea lamprey (Petromyzon marinus) development

2023-05-26 | GSE220552 | GEO

Nanostring nCounter expression analysis of sea lamprey embryos and adult testes (Petromyzon marinus)

Project description:This project is designed to measure changes in gene expression during sea lamprey development and in the adult germline

2016-10-21 | GSE76064 | GEO

Petromyzon marinus

Project description:Genome sequencing of the sea lamprey

| PRJNA12880 | ENA

Gene expression in the olfactory epithelia of parasitic and reproductive adult sea lampreys

Project description:To determine gene expression differences in the olfactory epithelium of sea lamprey between sequential yet behaviorally distinct adult life history stages 2 samples: parasitic adults removed from fish in northern Lake Huron and Lake Michigan in February and March, and reproductive adults collected from Lake Huron and Lake Michigan tributaries in June

2011-11-30 | E-GEOD-24467 | biostudies-arrayexpress

Array CGH comparison of genomic sequence content between tissues from the same animal

Project description:DNA was isolated from tissues (blood, sperm, or liver). DNA from different tissues from the same organism were labeled with alternate fluorophores (Cy3 or Cy5) and hybridized to a custom array that was designed from lamprey (Petromyzon marinus) genomic sequence. 1 animal - sperm vs. blood, 2 animals - blood vs. liver

2012-08-19 | E-GEOD-23757 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data