Browse
Submit Data
Databases
API
Help

Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

52 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA-Seq of wild type and paspro1/paspro2 mutant anthers

ABSTRACT: We collected the samples, rice anthers at the anthesis stage from the wild type and paspro1/paspro2 mutant anther (Dongjin cultivar), from our field and immediately froze the samples with liquid nitrogen. Later, We extract RNA from the samples and performed RNA sequencing.

INSTRUMENT(S): Illumina NovaSeq 6000

ORGANISM(S): Oryza sativa Japonica Group

SUBMITTER: Woo-Jong Hong

PROVIDER: E-MTAB-12375 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

RNA-Seq of wild type and osmtd2 mutant rice anthers

Project description:Rice anthers at anthesis stage from the wild type and osmtd2 mutant anther (Dongjin cultivar) We collected the sample from our field and immediately froze the samples with liquid nitrogen.

2021-06-30 | E-MTAB-10412 | biostudies-arrayexpress

RNA-Seq of Oryza sativa Dongjin (rice) wild type and gori mutant anthers

Project description:Rice anthers at anthesis stage from the wild type and gori mutant anther (Dongjin cultivar) We collected the sample from our field and immediately froze the samples with liquid nitrogen.

2020-11-03 | E-MTAB-9726 | biostudies-arrayexpress

RNA-Seq of wild type and tape-1 mutant rice anthers

Project description:Rice anthers at anthesis stage from the wild type and tape-1 mutant anther (Dongjin cultivar) We collected the sample from our field and immediately froze the samples with liquid nitrogen.

2022-12-31 | E-MTAB-10439 | biostudies-arrayexpress

RNA-Seq of wild type and MADS triple mutant anthers

Project description:Rice anthers at anthesis stage from the wild type and MADS triple mutant anther (Dongjin cultivar) We collected the sample from our field and immediately froze the samples with liquid nitrogen.

2022-01-01 | E-MTAB-11246 | biostudies-arrayexpress

RNA-Seq analysis of the Oryza sativa Dongjin wild type and far1-1 mutant anthers

Project description:Rice anthers at the anthesis stage were collected from the wild type (Dongjin cultivar) and far1-1 mutant grown in the paddy field located in the KyungHee University. The collected samples were immediately frozen with liquid nitrogen. RNA from these samples was extracted with RNeasy plant mini kit according to the manufacture's documentation.

2022-12-31 | E-MTAB-10106 | biostudies-arrayexpress

RNA sequencing of control and OsRac6 knockout mutant in mature rice anthers

Project description:Rice anthers at anthesis stage from the wild type and osrac6-1 mutant anther (Dongjin cultivar) We collected the sample from our field and immediately froze the samples with liquid nitrogen.

2024-07-02 | E-MTAB-13965 | biostudies-arrayexpress

RNAseq analyses in HEK293T-ACE2 cells infected with SARS-CoV-2 (VOC Delta, 24hours) vs untreated cells

Project description:In this study a gene expression (i.e., RNAseq) analysis was performed in HEK293T-ACE2 cellular model upon infection with viral particle belonging to VOC Delta (MOI: 0.026) for 24 hours in order to have a global picture of the transcriptome landscape in response to early phase of infection of SARS-CoV-2 ( VOC Delta infection and to evaluate the role of Ca2+ in HEK293-ACE2 cellular model and transfer to homeostasis in SARS-COV-2 patients (by Pasqualino de Antonellis1-2* and Veronica Ferrucci 1-2* (first authors) et al. and Massimo Zollo1-2# (corresponding author). Manuscript in preparation 2022 July 15th 2022. Short title "ATP2B1 (PMCA1), regulated by FOXO3, influences susceptibility to severe COVID19".

2022-12-01 | E-MTAB-11973 | biostudies-arrayexpress

RNA-Seq of rice anther and pollen at anthesis stage

Project description:Rice mature anther and mature pollen at anthesis stage from Dongin cultivar (Oryza sativa L. japonica) We collected the sample from our field using RNA Later to reveal differentially expressed genes.

2020-07-10 | E-MTAB-7974 | biostudies-arrayexpress

RNA-Seq of various rice tissues (Root hair, Collar, Leaf sheath, Ligule, Anther wall)

Project description:Various rice tissues were collected and immediately frozen from Dongin cultivar (Oryza sativa L. japonica).

2022-12-31 | E-MTAB-11005 | biostudies-arrayexpress

RNA-seq of Senegalese sole testis: comparison between fish fed a control and an algae-supplemented diet

Project description:Senegalese sole males born and raised in captivity (F1 males) do not spawn naturally and typically display lower gamete quality when compared with wild individuals. Broodstock nutrition is an important aspect when dealing with reproduction because it influences not only fish health, but also gamete and progeny quality. The usage of dietary algae antioxidants to improve fish reproduction is under-explored, especially in terms of the male reproductive system. In this experiment, 6 % of a blended meal of Phaeodactylum tricornutum and Gracilaria gracilis was incorporated in Senegalese sole broodstock feed, to evaluate the effects on sperm quality of F1 males throughout the breeding season. RNA-seq was employed to assess differences in the gonadal tissue of fish fed the algae supplemented diets.

2024-08-01 | E-MTAB-14218 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data