Browse
Submit Data
Databases
API
Help

Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

37 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Whole genome sequencing of spontaneous revertants derived from aneuploid Candida albicans strains

ABSTRACT: In Candida albicans, aneuploids are unstable. When grown on YPD-agar plates, aneuploids exhibit colony size variations. In this study, 6 aneuploid strains were spread on YPD-agar plates. The large colonies from each strain were sequenced. The small colonies were sequenced in another project.

INSTRUMENT(S): BGISEQ-500

ORGANISM(S): Candida albicans

SUBMITTER: Hao Li

PROVIDER: E-MTAB-12409 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

Whole genome sequencing of Candida albicans isolate YJB-T490 derived fluconazole adaptors obtained at 37C

Project description:Candida albicans isolate YJB-T490 was spread on YPD plates supplemented with fluconazole. The plates were incubated at 37C. 54 adaptors were sequenced.

2022-09-24 | E-MTAB-12169 | biostudies-arrayexpress

Whole genome sequencing of SC5314-derived fluconazole adaptors

Project description:Candida albicans lab strain SC53114 was used to obtain fluconazole-tolerant adaptors. 53 adaptors as well as the parent strain were sequenced.

2022-09-24 | E-MTAB-12175 | biostudies-arrayexpress

Whole genome sequencing of fluconazle resistant and tolerant adaptors in Candida albicans

Project description:Candida albicans lab strain SC5314 was daily passaged in YPD broth supplemented with fluconazole. Some fluconazole-resistant and some fluconazole-tolerant adaptors were sequenced.

2022-10-10 | E-MTAB-12189 | biostudies-arrayexpress

Whole genome sequencing of rezafungin adaptors in Candida albicans

Project description:C. albicans lab strain SC5314 was exposed to rezafungin. 20 rezafungin-tolerant adaptors as well as the parent were sequenced.

2022-08-29 | E-MTAB-12116 | biostudies-arrayexpress

Whole genome sequencing of brefeldin A adaptors in Cryptococcus neoformans

Project description:Cryptococcus neoformans lab strain H99 was grown in YPD broth supplemented with 16ug/ml brefeldin A for 72h at 30C. We used 3 biological repeats. Then the culture was washed and diluted with distilled water, then plated on YPD plate. From each culture, we randomly tested 120 colonies to see if they obtained tolerance to brefeldin A. In total, we got 30 tolerant adaptors. We sequenced the adaptors as well as the parent.

2022-10-15 | E-MTAB-12220 | biostudies-arrayexpress

Whole genome sequencing of sub-MIC tunicamycin adaptors in Cryptococcus neoformans

Project description:Cryptococcus neoformans lab strain H99 was grown in YPD broth supplemented with 0.0625ug/ml tunicamycin. We did three technical replicates. Randomly 120 colones from each culture were tested for tolerance to tunicamycin. Totally we got 7 tolerant adaptors. These adaptors were sequenced.

2023-07-13 | E-MTAB-12268 | biostudies-arrayexpress

Whole genome sequencing of supra-MIC tunicamycin adaptors in Cryptococcus neoformans

Project description:Cryptococcus neoformans lab strain H99 was spread on YPD plate supplemented with 0.25ug/ml tunicamycin. Randomly 30 adaptors were chosen. 10 of them were used to obtain revertatants which lost aneuploidy step by step. These adaptors, and the revertants, as well as the parent, were sequenced.

2022-10-22 | E-MTAB-12276 | biostudies-arrayexpress

Whole genome sequencing of revertants derived from aneuploid Cryptococcus neoformans strains

Project description:In Cyptococcus neoformas, 4 aneuploid strains were spread on YPD plates. We saw colony size variations. We randomly sequenced some large colonies derived from each of the 4 aneuploid strains.

2022-10-24 | E-MTAB-12287 | biostudies-arrayexpress

Whole genome sequencing of adaptors derived from exposure to low amount of fluconazole in Candida albicans

Project description:Candida albicans lab strain SC5314 was exposued to sub-inhibitory amount (0.5 ug/ml) fluconazole for 24h. Two tolerant adaptors (FY1284 and FY1285) were obtained. The adaptors were unstable on YPD plate, yielding small (S) and large (L) colonies. The small (FY1284-S and FY1285-S) and the large (FY1284-L and FY1285-L) colonies were sequenced

2022-07-18 | E-MTAB-11923 | biostudies-arrayexpress

Whole genome sequencing of Cryptococcus neoformans adaptors derived from exposure to supra-MIC amount of brefeldin A

Project description:Cryptococcus neoformans lab strain H99 was spread on YPD plates supplemented with 64ug/ml brefeldin A. Randomly 60 adaptors were chosen. These adaptors, as well as the parent were sequenced.

2022-10-31 | E-MTAB-12318 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data