Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0

Single cell GET-seq analysis of cancer cell lines upon administration of FOLFOX or FOLFIRI at different time points


ABSTRACT: This experiment is aimed at studying the effect of two different chemotherapies (FOLFOX and FOLFIRI) on chromatin accessibility of HCT116 colorectal cancer cell line at different time points. Two early time points (8h and 16h) are used to evaluate the acute response, while a late time point (two weeks, LT) is used to evaluate the long-term effect. After two week exposure, cells are grown without treatments for additional two weeks, to evaluate the chromatin landscapes of cells which survived the chemotherapy. A pool of the same cells has been independently profiled by scRNA-seq.

INSTRUMENT(S): Illumina NovaSeq 6000

ORGANISM(S): Homo sapiens

SUBMITTER: Davide Cittaro 

PROVIDER: E-MTAB-12952 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

Similar Datasets

2023-09-01 | E-MTAB-12953 | biostudies-arrayexpress
2023-09-01 | E-MTAB-12949 | biostudies-arrayexpress
2023-09-01 | E-MTAB-12950 | biostudies-arrayexpress
2023-09-01 | E-MTAB-12948 | biostudies-arrayexpress
2023-09-01 | E-MTAB-12951 | biostudies-arrayexpress
2023-09-01 | E-MTAB-12947 | biostudies-arrayexpress
2021-08-17 | E-MTAB-9650 | biostudies-arrayexpress
2021-08-17 | E-MTAB-9651 | biostudies-arrayexpress
2024-06-01 | E-MTAB-13052 | biostudies-arrayexpress
2021-08-17 | E-MTAB-10218 | biostudies-arrayexpress