Browse
Submit Data
Databases
API
Help

Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

37 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcriptome analysis of Saccharomyces cerevisiae petites

ABSTRACT: Two methods were used to induce petites from S, cerevisiae wild type strain MK288:.(1) MK288 was spread on YPD plate supplemented with 8 μg/ml fluconazole (2) MK288 was grown in YPD broth supplemented with 25 μg/ml ethidium bromide. Transcriptomes of the petites (TJ140 and TJ235) were compared to the wild type.

INSTRUMENT(S): DNBSEQ-T7

ORGANISM(S): Saccharomyces cerevisiae

SUBMITTER: Sun Liuliu

PROVIDER: E-MTAB-13195 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

Whole genome sequencing of papillary colonies on YPD plate supplemented with tebuconazole in Candida albicans

Project description:Candida albicans lab strain SC5314 was spotted on YPD plates supplemented with 0.25-16 μg/ml tebuconazole. Randomly at least 4 papillary colonies from each plate were sequenced.

2023-08-31 | E-MTAB-13245 | biostudies-arrayexpress

Transcriptional changes in petites derived from S288C

Project description:Saccharomyces cerevisiae reference strain S288C was used to obtain petites. FIP is fluconazole induced petite. EIP is EtBr induced petite. S288C, FIP and EIP were grown in YPD broth from OD600=0.1 till 1.0. Cells were collected and transcriptomes were analyzed.

2024-11-18 | E-MTAB-14553 | biostudies-arrayexpress

Transcriptome analysis of aneuploid tebuconazole adaptors in Candida albicans

Project description:Candida albicans lab strain SC5314 was used as parent to obtain tebuconazole adaptors. Two adaptors, TJ1503 and TJ1669 were aneuploid. Transcriptomes of these two strains were compared to SC5314.

2023-09-05 | E-MTAB-13210 | biostudies-arrayexpress

Transcriptome analysis of tebuconazole adaptors in Candida auris

Project description:Candida auris wild type strain FY279 was used to tebuconazole adaptors. Transcriptomes of two adaptors, TJ42 and TJ44, were compared to wild type.

2023-09-05 | E-MTAB-13215 | biostudies-arrayexpress

Whole genome sequencing of fluconazole-resistant mutants in Candida haemulonii

Project description:Candida haemulonii wild type strain TJ180 were expsoured to 64 and 128 μg/ml fluconazole. 14 resistant mutants as well as the parent were sequenced.

2024-01-10 | E-MTAB-13199 | biostudies-arrayexpress

H99 derived uniconzole (0.25ug/mL and 2ug/mL) adaptors

Project description:H99 derived 2 ug/mL uniconazole adaptors: Approximately 1 million cells of Crypotoccus neoformans lab strain H99 were spread on YPD-agar plate supplemented with 2 ug/mL uniconazole. After 5 days incubation of the plate at 30℃, randomly 30 adaptors were chosen. 21 adaptors were resistant and were sequenced. H99 derived 0.25 ug/mL uniconazole adaptors: Cells of H99 were adjusted to 2500 cells/mL. The culture was supplemented with 0.25 ug/mL uniconazole. After 72 h incubation, the culture was washed, diluted and approximately 200 cells were spread on YPD-agar plate. Randomly 95 colonies were tested for resistance to uniconazole. One colony (TJ3832) was resistant and was sequenced.

2024-04-30 | E-MTAB-14025 | biostudies-arrayexpress

Whole genome sequencing of deletion strains of Candida albicans CDR1, CDR2, MDR1, CMP1, CNB1 and CRZ1 derived tebuconazole adaptors

Project description:From C. albicans reference strain SC5314, CDR1, CDR2, MDR1, CMP1, CNB1, CRZ1 were deleted. The deletion strains were spread on YPD plates supplemented with tebuconazole. Randomly 4 adaptors derived from each deletion strain were sequenced.

2023-08-09 | E-MTAB-13238 | biostudies-arrayexpress

H99 derived Uniconazole (1ug/mL) adaptors

Project description:Approximately 1 million cells of Crypotoccus neoformans lab strain H99 were spread on YPD-agar plate supplemented with 1 ug/mL uniconazole. After 5 days incubation of the plate at 30℃, randomly 30 adaptors were chosen and sequenced.

2024-04-30 | E-MTAB-14024 | biostudies-arrayexpress

Whole genome sequencing of unstable tebuconazole adaptors in Candida albicans

Project description:Two tebuconazole adaptors, TJ1503 and TJ1669, were unstable. On YPD-agar plates, they gave rise to small (S) and large (L) colonies. We sequenced both types of colonies. TJ1503S and TJ1669S were the S colonies. TJ1503L and TJ1669L were the large colonies.

2023-09-06 | E-MTAB-13209 | biostudies-arrayexpress

AFR1 deletion strain derived uniconazole adaptors

Project description:Gene AFR1 was deleted from Cryptococcus neoformans lab strain H99. Approximately 1 million cells of the deletion strain were spread on YPD-agar plate supplemented with 0.125ug/mL uniconazole. Randomly 30 adaptors were chosen. 16 adaptors were resistant to uniconazole and were sequenced.

2024-04-30 | E-MTAB-14026 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data