Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0

JHI St WM daylength


ABSTRACT: Recent advances have defined some of the components of photoperiodic signalling that lead to tuberisation in potato including orthologues of FLOWERING LOCUS T (StSP6A) and CYCLING DOF FACTOR (StCDF1). The aim of the current study is to investigate the molecular basis of permissive tuber initiation under long days in Solanum tuberosum Neo-Tuberosum by comparative analysis with an obligate short day Solanum tuberosum ssp. Andigena accession. We show that the Neo-Tuberosum accession, but not the Andigena, contains alleles that encode StCDF1 proteins modified in the C-terminal region, likely to evade long day inhibition of StSP6A expression. We also identify an allele of StSP6A from the Neo-Tuberosum accession, absent in the Andigena, which is expressed under long days. Other leaf transcripts and metabolites that show different abundances in tuberising and non-tuberising samples were identified adding detail to tuberisation-associated processes. Overall, the data presented in this study highlight the subtle interplay between components of the clock-CONSTANS-StSP6A axis which collectively may interact to fine-tune the timing of tuberisation.

ORGANISM(S): Solanum tuberosum

SUBMITTER: Pete Hedley 

PROVIDER: E-MTAB-1799 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

Similar Datasets

2013-04-01 | E-GEOD-39230 | biostudies-arrayexpress
2020-07-01 | E-MTAB-8346 | biostudies-arrayexpress
2013-04-01 | GSE39230 | GEO
2009-06-13 | E-GEOD-11781 | biostudies-arrayexpress
2011-10-05 | E-GEOD-31336 | biostudies-arrayexpress
2023-07-12 | E-MTAB-12771 | biostudies-arrayexpress
2011-12-03 | E-GEOD-34118 | biostudies-arrayexpress
2011-10-06 | GSE31336 | GEO
2011-10-05 | E-GEOD-31178 | biostudies-arrayexpress
| PRJNA301499 | ENA