Unknown,Transcriptomics,Genomics,Proteomics

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MicroRNA expression profiling of urine and cancer tissues of patients with bladder cancer, and those from the controls with haematuria


ABSTRACT: Mid-stream urine was collected from bladder cancer patients prior to surgery. Both tumor tissue and normal bladder mucosa that are located at >3cm away from the tumor edge were obtained by cystoscopy. For the normal controls with haematuria, urine samples were collected from patients who had normal cystoscopic finding and absence of malignancy with >6 months follow-up. All urine samples were centrifuged at 2500 r.c.f. for 20 minutes and the urine supernatant was collected. Total RNA of urine supernatant and frozen tissue was extracted using MirVanaTM PARISTM Kit (Ambion) in accordance with the manufacturer’s recommended protocols. AgilentTM Human miRNA Microarray Chip (Release 13.0, Agilent Technologies, Santa Clara, CA, USA) was used to determine the microRNA expression profiles of the samples.

INSTRUMENT(S): Agilent Microarray Hybridization Chamber Kit and Hybridization oven rotator, Agilent microarray Scanner, Agilent miRNA Complete Labeling and Hyb Kit, Extraction kit

ORGANISM(S): Homo sapiens

SUBMITTER: CF Ng 

PROVIDER: E-MTAB-2573 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

Cell-free urinary microRNA-99a and microRNA-125b are diagnostic markers for the non-invasive screening of bladder cancer.

Zhang Ding-Zuan DZ   Lau Kin-Mang KM   Chan Eddie S Y ES   Wang Gang G   Szeto Cheuk-Chun CC   Wong Kenneth K   Choy Richard K W RK   Ng Chi-Fai CF  

PloS one 20140711 7


<h4>Background</h4>Evidence implicated the diagnostic significance of microRNAs in whole urine/urine sediments in urothelial carcinoma of the bladder (UCB). However, the contaminated blood cells in patients with haematouria significantly altered the expression profiles of urinary microRNA, influencing the test accuracy.<h4>Methods</h4>MicroRNA profiles of the urine supernatants of UCB patients and controls without any malignancy and profiles of malignant and corresponding normal mucosa tissues f  ...[more]

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