Unknown,Transcriptomics,Genomics,Proteomics

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Androgen stimulation time-course of TMPRSS2-ERG fusion positive VCaP cells.


ABSTRACT: The TMPRSS2-ERG fusion positive prostate cancer cell line VCaP was grown for 72h in steroid depleted media (RPMI 10% CDT FBS) prior to vehicle (ethanol) or androgen stimulation (1nM R1881). To allow detailed analysis of androgen regulated gene expression in the VCaP prostate cancer cell line total RNA was harvested every every hour up to 24h using trizol (Sigma), quantified using a Nanodrop spectrophotometer (ND-1000). RNA samples were prepared for analysis on Illumina Human 12 v3 BeadArrays. Raw bead-summary data were generated using GenomeStudio version 1.9.0 (Illumina Inc.). For integrative analysis expression array data were normalised in R using the beadarray software and BASH (see Supplementary Methods for details) (Cairns et al., 2008; Dunning et al., 2007).

ORGANISM(S): Homo sapiens

SUBMITTER: Charlie Massie 

PROVIDER: E-MTAB-2968 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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