Time-course RNA-seq based transcriptome of Lactococcus piscium MKFS47
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ABSTRACT: Lactococcus piscium strain MKFS47 is a psychrotrophic spoilage lactic acid bacterium, isolated from the cold-stored modified atmosphere packaged broiler filet strips with the first signs of spoilage. For the experiment L. piscium MKFS47 was grown in MRS broth without acetate with 2% glucose, samples were taken at 3h, 5h and 11h in three replicates. The extracted RNA was sequenced using SOLiD 5500XL. RNA-seq reads were mapped against L. piscium MKFS47 genome and were counted per gene using Lifescope software. The experiment was conducted to identify the time-course differential expression of the L. piscium MKFS47 genes.
INSTRUMENT(S): AB SOLiD 4 System
ORGANISM(S): Lactococcus piscium
SUBMITTER: Margarita Andreevskaya
PROVIDER: E-MTAB-3245 | biostudies-arrayexpress |
REPOSITORIES: biostudies-arrayexpress
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