RNA-seq transcriptome profiling in the Fagus sylvatica trunk
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ABSTRACT: In a field study, trees from two sites in Lower Saxony, Germany, were compared. RNA-seq (performed on an Illumina HiSeq 2000) was conducted on RNA from developing xylem tissue from 4 different harvests throughout the growth season to analyze transcriptional changes related to variations in wood formation and development. A transcriptome contig database was created from the combined raw reads using ABySS. Mapping of reads from distinct samples to the contig database was performed using Bowtie.
INSTRUMENT(S): Illumina HiSeq 2000
ORGANISM(S): Fagus sylvatica
SUBMITTER: Dennis Janz
PROVIDER: E-MTAB-3615 | biostudies-arrayexpress |
REPOSITORIES: biostudies-arrayexpress
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