Unknown,Transcriptomics,Genomics,Proteomics

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RNA-seq transcriptome profiling in the Fagus sylvatica trunk


ABSTRACT: In a field study, trees from two sites in Lower Saxony, Germany, were compared. RNA-seq (performed on an Illumina HiSeq 2000) was conducted on RNA from developing xylem tissue from 4 different harvests throughout the growth season to analyze transcriptional changes related to variations in wood formation and development. A transcriptome contig database was created from the combined raw reads using ABySS. Mapping of reads from distinct samples to the contig database was performed using Bowtie.

INSTRUMENT(S): Illumina HiSeq 2000

ORGANISM(S): Fagus sylvatica

SUBMITTER: Dennis Janz 

PROVIDER: E-MTAB-3615 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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