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Dual readout of two histone modifications at the same time with synthetic recombinant proteins reveals H3K36me3-H3K9me3 bivalency at weakly transcribed genes


ABSTRACT: In this proof-of-principle approach we have successfully applied a recombinant heterotypic histone modification interacting domain (HiMID) against H3K9me3 and H3K36me2/3 by using AND logic. We discovered that this new bivalent state is associated with the bodies of weakly transcribed genes and enhancers. Further, we also uncovered that this dual state is enriched in zinc finger coding genes and most likely connected to the zinc finger-Trim28-SetDB1 pathway.

INSTRUMENT(S): Illumina HiSeq 2500

ORGANISM(S): Homo sapiens

SUBMITTER: Goran Kungulovski 

PROVIDER: E-MTAB-4216 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

Application of dual reading domains as novel reagents in chromatin biology reveals a new H3K9me3 and H3K36me2/3 bivalent chromatin state.

Mauser Rebekka R   Kungulovski Goran G   Keup Corinna C   Reinhardt Richard R   Jeltsch Albert A  

Epigenetics & chromatin 20170925 1


<h4>Background</h4>Histone post-translational modifications (PTMs) play central roles in chromatin-templated processes. Combinations of two or more histone PTMs form unique interfaces for readout and recruitment of chromatin interacting complexes, but the genome-wide mapping of coexisting histone PTMs remains an experimentally difficult task.<h4>Results</h4>We introduce here a novel type of affinity reagents consisting of two fused recombinant histone modification interacting domains (HiMIDs) fo  ...[more]

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