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Oryza sativa Transcriptome or Gene expression

ABSTRACT: In this study, we analyzed the early response of two rice cultivars to infection by RSV (Rice stripe virus) and its carrier at the transcriptome level using next-generation deep-sequencing techniques. We investigated the alteration in gene expression between a disease-resistant cultivar and a susceptible cultivar before and after inoculation with RSV by co-culturing with Laodelphax striatellus for 48 h. Our study provides insight at the molecular level into the mechanism of development of rice stripe disease, which contributes to our understanding of the rice-RSV interaction.

INSTRUMENT(S): Illumina Genome Analyzer II

ORGANISM(S): Oryza sativa

SUBMITTER: Xiaochun Lu

PROVIDER: E-MTAB-4392 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Comparative transcriptome analysis of two rice varieties in response to rice stripe virus and small brown planthoppers during early interaction.

Zheng Wenjing W Ma Li L Zhao Jiaming J Li Zhiqiang Z Sun Fuyu F Lu Xiaochun X

PloS one 20131216 12

Rice stripe, a virus disease, transmitted by a small brown planthopper (SBPH), has greatly reduced production of japonica rice in East Asia, especially in China. Although we have made great progress in mapping resistance genes, little is known about the mechanism of resistance. By de novo transcriptome assembling, we gained sufficient transcript data to analyze changes in gene expression of early interaction in response to SBPH and RSV infection in rice. Respectively 648 and 937 DEGs were detect ...[more]

PMID: 24358146

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