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Unknown,Transcriptomics,Genomics,Proteomics

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Transcriptome sequencing of tomato

ABSTRACT: Gene expression of all tomato genes was determined by replicated (two biological replicates of each tissue) strand-specific Illumina RNA-Seq of root, leaf, flower (2 stages) and fruit (6 stages). Note: Samples in SRA were assigned the same sample accession. This is incorrect as there are different samples, hence âSource Nameâ was replaced with new values. Comment[ENA_SAMPLE] contains the original SRA sample accessions.

INSTRUMENT(S): Illumina HiSeq 2000

ORGANISM(S): Solanum lycopersicum

SUBMITTER: Dani Zamir

PROVIDER: E-MTAB-4812 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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The tomato genome sequence provides insights into fleshy fruit evolution.

Nature 20120530 7400

Tomato (Solanum lycopersicum) is a major crop plant and a model system for fruit development. Solanum is one of the largest angiosperm genera and includes annual and perennial plants from diverse habitats. Here we present a high-quality genome sequence of domesticated tomato, a draft sequence of its closest wild relative, Solanum pimpinellifolium, and compare them to each other and to the potato genome (Solanum tuberosum). The two tomato genomes show only 0.6% nucleotide divergence and signs of ...[more]

PMID: 22660326

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