Unknown,Transcriptomics,Genomics,Proteomics

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RNA-Seq of Collaborative Cross Mouse Founder Strains


ABSTRACT: RNA-Seq was performed on all 8 mouse founder strains of the Collaborative Cross to obtain a comprehensive splicing landscape of each strain.

INSTRUMENT(S): Illumina HiSeq 2000

ORGANISM(S): Mus musculus

SUBMITTER: Christina Zheng 

PROVIDER: E-MTAB-5020 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

Splicing landscape of the eight collaborative cross founder strains.

Zheng Christina L CL   Wilmot Beth B   Walter Nicole Ar NA   Oberbeck Denesa D   Kawane Sunita S   Searles Robert P RP   McWeeney Shannon K SK   Hitzemann Robert R  

BMC genomics 20150205


<h4>Background</h4>The Collaborative Cross (CC) is a large panel of genetically diverse recombinant inbred mouse strains specifically designed to provide a systems genetics resource for the study of complex traits. In part, the utility of the CC stems from the extensive genome-wide annotations of founder strain sequence and structural variation. Still missing, however, are transcriptome-specific annotations of the CC founder strains that could further enhance the utility of this resource.<h4>Res  ...[more]

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