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RNA-Seq of Collaborative Cross Mouse Founder Strains

ABSTRACT: RNA-Seq was performed on all 8 mouse founder strains of the Collaborative Cross to obtain a comprehensive splicing landscape of each strain.

INSTRUMENT(S): Illumina HiSeq 2000

ORGANISM(S): Mus musculus

SUBMITTER: Christina Zheng

PROVIDER: E-MTAB-5020 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Splicing landscape of the eight collaborative cross founder strains.

Zheng Christina L CL Wilmot Beth B Walter Nicole Ar NA Oberbeck Denesa D Kawane Sunita S Searles Robert P RP McWeeney Shannon K SK Hitzemann Robert R

BMC genomics 20150205

<h4>Background</h4>The Collaborative Cross (CC) is a large panel of genetically diverse recombinant inbred mouse strains specifically designed to provide a systems genetics resource for the study of complex traits. In part, the utility of the CC stems from the extensive genome-wide annotations of founder strain sequence and structural variation. Still missing, however, are transcriptome-specific annotations of the CC founder strains that could further enhance the utility of this resource.<h4>Res ...[more]

PMID: 25652416

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