Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0

RNA-seq of livers in control and Cnot1 tamoxifen-inducible liver-specific knockout mice


ABSTRACT: Gene expression is balanced by transcription and mRNA degradation. Shortening of polyadenosine (poly(A)) tails (deadenylation) is the initial step in the decay of most mRNAs. However, the mechanism by which deadenylation controls mRNA expression is not fully understood. This experiment aimed to determine changes in gene expression and mRNA stability in livers of control and Cnot1 tamoxifen-inducible liver-specific knockout mice. For comprehensive mRNA half-life profiling, we injected control and Cnot1 tamoxifen-inducible liver-specific knockout mice, which were placed on a tamoxifen-containing diet at 6 weeks of age for 2 weeks, intraperitoneally with 2 mg actinomycin D per g body weight for 4 and 8 hr. 1 g of total RNA was used for RNA-seq library preparation with Illumina TruSeq Stranded mRNA LT Sample Prep Kit. 109 base-pair pair-end read RNA-seq was performed with Hiseq PE Rapid Cluster Kit v2-HS and Hiseq Rapid SBS Kit v2-HS (200 Cycle) on Illumina Hiseq2500.

INSTRUMENT(S): Illumina HiSeq 2500

ORGANISM(S): Mus musculus

SUBMITTER: Tadashi Yamamoto 

PROVIDER: E-MTAB-5901 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

Similar Datasets

2020-03-30 | E-MTAB-5887 | biostudies-arrayexpress
2020-03-30 | E-MTAB-6941 | biostudies-arrayexpress
2020-03-30 | E-MTAB-8882 | biostudies-arrayexpress
2021-11-24 | GSE156810 | GEO
2015-09-23 | E-GEOD-73366 | biostudies-arrayexpress
2015-09-23 | GSE73366 | GEO
2017-12-01 | GSE92316 | GEO
2018-10-23 | GSE74771 | GEO
| EGAD00001003814 | EGA
2021-02-17 | GSE145426 | GEO