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GENCODE PCR-Seq Batch I

ABSTRACT: As part of the ENCODE consortium the GENCODE project is producing a reference gene set through manual and automated gene prediction. Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing. This is the RNASeq part of batch I, based on annotation from July 2008 (without pseudogenes).

ORGANISM(S): Homo sapiens

SUBMITTER: Felix Kokocinski

PROVIDER: E-MTAB-612 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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GENCODE: producing a reference annotation for ENCODE.

Harrow Jennifer J Denoeud France F Frankish Adam A Reymond Alexandre A Chen Chao-Kung CK Chrast Jacqueline J Lagarde Julien J Gilbert James G R JG Storey Roy R Swarbreck David D Rossier Colette C Ucla Catherine C Hubbard Tim T Antonarakis Stylianos E SE Guigo Roderic R

Genome biology 20060807

<h4>Background</h4>The GENCODE consortium was formed to identify and map all protein-coding genes within the ENCODE regions. This was achieved by a combination of initial manual annotation by the HAVANA team, experimental validation by the GENCODE consortium and a refinement of the annotation based on these experimental results.<h4>Results</h4>The GENCODE gene features are divided into eight different categories of which only the first two (known and novel coding sequence) are confidently predic ...[more]

PMID: 16925838

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