Dataset Information

Anomaly Detection in Biological Early Warning Systems Using Unsupervised Machine Learning.

ABSTRACT: The use of bivalve mollusks as bioindicators in automated monitoring systems can provide real-time detection of emergency situations associated with the pollution of aquatic environments. The behavioral reactions of Unio pictorum (Linnaeus, 1758) were employed in the development of a comprehensive automated monitoring system for aquatic environments by the authors. The study used experimental data obtained by an automated system from the Chernaya River in the Sevastopol region of the Crimean Peninsula. Four traditional unsupervised machine learning techniques were implemented to detect emergency signals in the activity of bivalves: elliptic envelope, isolation forest (iForest), one-class support vector machine (SVM), and local outlier factor (LOF). The results showed that the use of the elliptic envelope, iForest, and LOF methods with proper hyperparameter tuning can detect anomalies in mollusk activity data without false alarms, with an F1 score of 1. A comparison of anomaly detection times revealed that the iForest method is the most efficient. These findings demonstrate the potential of using bivalve mollusks as bioindicators in automated monitoring systems for the early detection of pollution in aquatic environments.

SUBMITTER: Grekov AN

PROVIDER: S-EPMC10007031 | biostudies-literature | 2023 Mar

REPOSITORIES: biostudies-literature

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Anomaly Detection in Biological Early Warning Systems Using Unsupervised Machine Learning.

Grekov Aleksandr N AN Kabanov Aleksey A AA Vyshkvarkova Elena V EV Trusevich Valeriy V VV

Sensors (Basel, Switzerland) 20230301 5

The use of bivalve mollusks as bioindicators in automated monitoring systems can provide real-time detection of emergency situations associated with the pollution of aquatic environments. The behavioral reactions of <i>Unio pictorum</i> (Linnaeus, 1758) were employed in the development of a comprehensive automated monitoring system for aquatic environments by the authors. The study used experimental data obtained by an automated system from the Chernaya River in the Sevastopol region of the Crim ...[more]

PMID: 36904891

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Project description:BackgroundMalaria continues to pose a significant health threat. Rapid identification of malaria infections and the deployment of active surveillance tools are crucial for achieving malaria elimination in regions where malaria is endemic, such as certain areas of Thailand. In this study, an anomaly detection system is introduced as an early warning mechanism for potential malaria outbreaks in countries like Thailand.MethodsUnsupervised clustering-based, and time series-based anomaly detection algorithms are developed and compared to identify abnormal malaria activity in Thailand. Additionally, a user interface tailored for anomaly detection is designed, enabling the Thai malaria surveillance team to utilize these algorithms and visualize regions exhibiting unusual malaria patterns.ResultsNine distinct anomaly detection algorithms we developed. Their efficacy in pinpointing verified outbreaks was assessed using malaria case data from Thailand spanning 2012 to 2022. The historical average threshold-based anomaly detection method triggered three times fewer alerts, while correctly identifying the same number of verified outbreaks when compared to the current method used in Thailand. A limitation of this analysis is the small number of verified outbreaks; further consultation with the Division of Vector Borne Disease could help identify more verified outbreaks. The developed dashboard, designed specifically for anomaly detection, allows disease surveillance professionals to easily identify and visualize unusual malaria activity at a provincial level across Thailand.ConclusionAn enhanced early warning system is proposed to bolster malaria elimination efforts for countries with a similar malaria profile to Thailand. The developed anomaly detection algorithms, after thorough comparison, have been optimized for integration with the current malaria surveillance infrastructure. An anomaly detection dashboard for Thailand is built and supports early detection of abnormal malaria activity. In summary, the proposed early warning system enhances the identification process for provinces at risk of outbreaks and offers easy integration with Thailand's established malaria surveillance framework.

Project description:BackgroundTimely identification of patients at a high risk of clinical deterioration is key to prioritizing care, allocating resources effectively, and preventing adverse outcomes. Vital signs-based, aggregate-weighted early warning systems are commonly used to predict the risk of outcomes related to cardiorespiratory instability and sepsis, which are strong predictors of poor outcomes and mortality. Machine learning models, which can incorporate trends and capture relationships among parameters that aggregate-weighted models cannot, have recently been showing promising results.ObjectiveThis study aimed to identify, summarize, and evaluate the available research, current state of utility, and challenges with machine learning-based early warning systems using vital signs to predict the risk of physiological deterioration in acutely ill patients, across acute and ambulatory care settings.MethodsPubMed, CINAHL, Cochrane Library, Web of Science, Embase, and Google Scholar were searched for peer-reviewed, original studies with keywords related to "vital signs," "clinical deterioration," and "machine learning." Included studies used patient vital signs along with demographics and described a machine learning model for predicting an outcome in acute and ambulatory care settings. Data were extracted following PRISMA, TRIPOD, and Cochrane Collaboration guidelines.ResultsWe identified 24 peer-reviewed studies from 417 articles for inclusion; 23 studies were retrospective, while 1 was prospective in nature. Care settings included general wards, intensive care units, emergency departments, step-down units, medical assessment units, postanesthetic wards, and home care. Machine learning models including logistic regression, tree-based methods, kernel-based methods, and neural networks were most commonly used to predict the risk of deterioration. The area under the curve for models ranged from 0.57 to 0.97.ConclusionsIn studies that compared performance, reported results suggest that machine learning-based early warning systems can achieve greater accuracy than aggregate-weighted early warning systems but several areas for further research were identified. While these models have the potential to provide clinical decision support, there is a need for standardized outcome measures to allow for rigorous evaluation of performance across models. Further research needs to address the interpretability of model outputs by clinicians, clinical efficacy of these systems through prospective study design, and their potential impact in different clinical settings.

Dataset Information

Anomaly Detection in Biological Early Warning Systems Using Unsupervised Machine Learning.

Publications

Anomaly Detection in Biological Early Warning Systems Using Unsupervised Machine Learning.

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