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Electrostatic Embedding of Machine Learning Potentials.

ABSTRACT: This work presents a variant of an electrostatic embedding scheme that allows the embedding of arbitrary machine learned potentials trained on molecular systems in vacuo. The scheme is based on physically motivated models of electronic density and polarizability, resulting in a generic model without relying on an exhaustive training set. The scheme only requires in vacuo single point QM calculations to provide training densities and molecular dipolar polarizabilities. As an example, the scheme is applied to create an embedding model for the QM7 data set using Gaussian Process Regression with only 445 reference atomic environments. The model was tested on the SARS-CoV-2 protease complex with PF-00835231, resulting in a predicted embedding energy RMSE of 2 kcal/mol, compared to explicit DFT/MM calculations.

SUBMITTER: Zinovjev K

PROVIDER: S-EPMC10061678 | biostudies-literature | 2023 Mar

REPOSITORIES: biostudies-literature

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Electrostatic Embedding of Machine Learning Potentials.

Zinovjev Kirill K

Journal of chemical theory and computation 20230223 6

This work presents a variant of an electrostatic embedding scheme that allows the embedding of arbitrary machine learned potentials trained on molecular systems <i>in vacuo</i>. The scheme is based on physically motivated models of electronic density and polarizability, resulting in a generic model without relying on an exhaustive training set. The scheme only requires <i>in vacuo</i> single point QM calculations to provide training densities and molecular dipolar polarizabilities. As an example ...[more]

PMID: 36821513

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