Dataset Information

Isolation, full sequence analysis, and in situ hybridization of pigeon paramyxovirus-1 genotype VI.2.1.1.2.2 from oriental turtle doves (Streptopelia orientalis).

ABSTRACT: Pigeon paramyxovirus-1 (PPMV-1), a genetic variant of avian paramyxovirus-1 (APMV-1), has been identified in Columbiformes and is the primary cause of diseases in captive and free-ranging pigeons. However, it has also been reported that PPMV-1 can infect chickens naturally and experimentally, thus posing a potential threat to the poultry industry. This study investigated a lethal outbreak of paramyxovirus infection that occurred among 16 oriental turtle doves (Streptopelia orientalis) in a walk-in aviary at a zoo from March to April 2021. Necropsies were performed, and histopathological findings revealed mild to moderate lymphoplasmacytic infiltration in several organs, such as the pancreas, liver, kidneys, and lungs. Reverse transcription polymerase chain reaction (RT-PCR) using formalin-fixed paraffin-embedded tissue blocks, virus isolation from fresh tissue, and in situ hybridization against the fusion (F) protein confirmed the diagnosis for PPMV-1 infection. The isolated strain NTU/C239/21 was fully sequenced by next-generation sequencing, and the results of phylogenetic analyses revealed that the F protein of NTU/C239/21 shared 98.8% nucleotide sequence identity with Pigeon/Taiwan/AHRI121/2017, which was isolated from a feral pigeon in Taiwan. The present study is the first to identify PPMV-1 infection in Streptopelia orientalis and suggests that Streptopelia orientalis may also play an important role in spreading the infection, similar to pigeons in APMV-1 spreading.

SUBMITTER: Wang HY

PROVIDER: S-EPMC10448340 | biostudies-literature | 2023 Oct

REPOSITORIES: biostudies-literature

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Isolation, full sequence analysis, and in situ hybridization of pigeon paramyxovirus-1 genotype VI.2.1.1.2.2 from oriental turtle doves (Streptopelia orientalis).

Wang Han-Yang HY Wu Meng-Chi MC Chen Hui-Wen HW Lai Yun-Chiang YC Huang Wei-Hsiang WH Chang Hui-Wen HW Jeng Chain-Ren CR Cheng Chiu-Hung CH Wang Pao-Jung PJ Lai Yen-Hsueh YH Chang Yen-Chen YC

Poultry science 20230727 10

Pigeon paramyxovirus-1 (PPMV-1), a genetic variant of avian paramyxovirus-1 (APMV-1), has been identified in Columbiformes and is the primary cause of diseases in captive and free-ranging pigeons. However, it has also been reported that PPMV-1 can infect chickens naturally and experimentally, thus posing a potential threat to the poultry industry. This study investigated a lethal outbreak of paramyxovirus infection that occurred among 16 oriental turtle doves (Streptopelia orientalis) in a walk- ...[more]

PMID: 37573845

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Project description:Avipoxviruses are considered as significant viral pathogen infecting a wide range of domestic and wild bird species globally, yet the majority of avipoxviruses that infect the wild bird species remain uncharacterized and their genetic diversities remain unclear. In this study, we present a novel pathogenic avipoxvirus isolated from the cutaneous pox lesions of a wild oriental turtle dove (Streptopelia orientalis), tentatively named as turtle dovepox virus (TDPV). The avipoxvirus was isolated by using the chorioallantoic membranes of specific pathogen-free chicken embryos which showed characteristic focal pock lesions, followed by cytopathic effects in host cells infected with oriental turtle dovepox virus. An effort in sequencing the whole genome of the poxvirus using next-generation sequencing was given, and the first whole genome sequence of TDPV was obtained. The TDPV genome was 281,386 bp in length and contained 380 predicted open reading frames (ORFs). While 336 of the predicted ORFs showed homology to other characterized avipoxviruses, the other 44 ORFs were unique. Subsequent phylogenetic analyses showed that the novel TDPV shared the closest genetic evolutionary linkage with the avipoxviruses isolated from pigeon in South Africa and India, of which the TDPV genome had the highest sequence similarity (92.5%) with South African pigeonpox virus (FeP2). In conclusion, the sequenced TDPV is significantly different from any other avipoxviruses isolated from avian or other natural host species considering genomic architecture and observed sequence similarity index. Thus, it likely should be considered a separate species. IMPORTANCE Over the past few decades, avipoxviruses have been found in a number of wild bird species including the oriental turtle dove. However, there is no whole genome sequence information on avipoxviruses isolated from oriental turtle dove, leaving us unclear about the evolutionary linkage of avipoxviruses in oriental turtle dove and other wild bird species. Thus, we believe that our study makes a significant contribution because it is the first report of the whole genome sequence of TDPV isolated from a wild oriental turtle dove, which enriches the genomic information of the genus Avipoxvirus, furthermore, contributes to tracking the genetic evolution of avipoxviruses-infected oriental turtle dove species.

Project description:BackgroundThe turtle dove is a migratory species that has suffered a rapid decline principally across its Northern ranges, despite pronounced conservation measures. Consequently, it has been categorized as 'Near Threatened' in Europe. Degradation of breeding habitats and a decrease in food resources are listed as principal causes of this decline. Despite its importance, the productivity of the North African population is widely unknown. Here we present the first estimation of the density of the breeding population and the superior reproductively of Streptopelia turtur arenicola in Morocco and entire North Africa.MethodsThis study was carried out for two seasons 2018-2019 in the Saïss plain, central Morocco. Based on previous data, doves were monitored weekly, from early March to late August, in aquatic ecosystems (two dams and one river) and farmlands (cereals and orchards). The breeding population was censused using the "point-count" method, following a walked transect of 5 km in orchards, 7 km in cereal fields, and 3 km along the river. Equally, nests were searched in natural habitats counting riparian trees, forests, and ornamental trees, and in orchards based on the Common Birds Census (CBC) methodology, in which the singing doves, mating pairs, nesting, and/or feeding behavior were the most monitored signs to discover nests. In orchards, nests were searched line-by-line based on the rows of fruit trees. For each recorded nest, we note the breeding chronology, clutch size and incubation period, success and failure factors, dimensions, and vertical placement on trees. To evaluate the predictors of doves' occurrence, we noted at each site the presence of cereals, water, human disturbance, presence of nesting trees, and predators.Results and discussionIn total, 3,580 turtle doves (22.37 birds/ha), including 240 breeding pairs, were documented. Nesting occurred mainly in olive groves, cereals were used for forage, and aquatic ecosystems for water sources. The nesting period lasted from late April to July (last fledglings). All nests were located on olive trees at a height of 225.30 ± 48.87 cm. The clutch size was 1.98 ± 0.13 (laid eggs/built nests), the incubation period lasted 14.16 ± 1.32 days, and the rearing period lasted 16.54 ± 1.76 days. The breeding success among the 240 monitored nests accounted for 73.84% during the nesting phase and 87.42% during the incubation phase; 71.5%% of nestlings have fledged, which is the highest success rate for turtle doves in Europe and Northwest Africa. Clutches were aborted mostly due to predation from snakes (7.5% of nests, 16.12% of eggs, and 5.63% of chicks), nest desertion (9.16% of nests and 5.37% of eggs), and marginally by the destruction of nests through farming activities. These findings are important for conservation plans, to restore turtle doves' habitats in Europe, where the species is widely declining.

Project description:The European turtle dove (Streptopelia turtur) is an Afro-Palearctic migrant whose populations have declined by 79% from 1980 to 2014. In 2018, the International Single Species Action Plan for the Turtle Dove (ISSAP) was developed with the goal of enabling, by 2028, an increase in turtle dove numbers along each of the three migration flyways (western, central, eastern). To achieve this, the illegal killing of turtle doves, a critical threat to the species, has to be eradicated. The Ionian Islands off the west coast of Greece lie on the eastern flyway and are considered a major turtle dove poaching hot-spot during spring migration. Quantifying wildlife crime, however, is challenging. In the absence of a reliable protocol for monitoring spring poaching levels, the agencies tasked with tackling the problem have no means of assessing the effectiveness of the anti-poaching measures and adapting them if required. Using passive acoustic monitoring (PAM) methods, we recorded gun hunting intensity at known turtle dove poaching sites during the 2019-2022 spring migrations (2-10 sites/season) with unprecedented spatial and temporal resolution. Based on published gunshot to killed/injured bird ratio for similar species (corroborated with discussions with local hunters) and an estimate of the proportion of hunting sites monitored by our PAM grid (using gunshot detection range estimates from control gunshots), we estimated that in 2021, up to 57,095 turtle doves were killed or injured across five Ionian Islands (Zakynthos, Paxi, Antipaxi, Othoni, and Mathraki). The 2022 estimate was almost half, but it is unclear as to whether the change is due to a decline in poachers or turtle doves. We propose ways of improving confidence in future estimates, and call for a temporary moratorium of autumn turtle dove hunting in Greece-as per ISSAP recommendation-until spring poaching is eradicated and the eastern flyway population shows signs of a full recovery. Finally, we hope our findings will pave the way for the development of PAM grids at turtle dove poaching hot-spots across all migration flyways, contributing to the global conservation of the species.

Dataset Information

Isolation, full sequence analysis, and in situ hybridization of pigeon paramyxovirus-1 genotype VI.2.1.1.2.2 from oriental turtle doves (Streptopelia orientalis).

Publications

Isolation, full sequence analysis, and in situ hybridization of pigeon paramyxovirus-1 genotype VI.2.1.1.2.2 from oriental turtle doves (Streptopelia orientalis).

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