DeepNet model empowered cuckoo search algorithm for the effective identification of lung cancer nodules
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PROVIDER: S-EPMC10518616 | biostudies-literature | 2023 Jan
REPOSITORIES: biostudies-literature
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Project description:While digital ocular fundus images are commonly used for diagnosing ocular tumors, interpreting these images poses challenges due to their complexity and the subtle features specific to tumors. Automated detection of ocular tumors is crucial for timely diagnosis and effective treatment. This study investigates a robust deep learning system designed for classifying ocular tumors. The article introduces a novel optimizer that integrates the Caputo fractional gradient descent (CFGD) method with the cuckoo search algorithm (CSA) to enhance accuracy and convergence speed, seeking optimal solutions. The proposed optimizer's performance is assessed by training well-known Vgg16, AlexNet, and GoogLeNet models on 400 fundus images, equally divided between benign and malignant classes. Results demonstrate the significant potential of the proposed optimizer in improving classification accuracy and convergence speed. In particular, the mean accuracy attained by the proposed optimizer is 86.43%, 87.42%, and 87.62% for the Vgg16, AlexNet, and GoogLeNet models, respectively. The performance of our optimizer is compared with existing approaches, namely stochastic gradient descent with momentum (SGDM), adaptive momentum estimation (ADAM), the original cuckoo search algorithm (CSA), Caputo fractional gradient descent (CFGD), beetle antenna search with ADAM (BASADAM), and CSA with ADAM (CSA-ADAM). Evaluation criteria encompass accuracy, robustness, consistency, and convergence speed. Comparative results highlight significant enhancements across all metrics, showcasing the potential of deep learning techniques with the proposed optimizer for accurately identifying ocular tumors. This research contributes significantly to the development of computer-aided diagnosis systems for ocular tumors, emphasizing the benefits of the proposed optimizer in medical image classification domains.
| S-EPMC11636747 | biostudies-literature
Project description:The accurate prediction of genetic networks using computational tools is one of the greatest challenges in the postgenomic era. Recurrent Neural Network is one of the most popular but simple approaches to model the network dynamics from time-series microarray data. To date, it has been successfully applied to computationally derive small-scale artificial and real-world genetic networks with high accuracy. However, they underperformed for large-scale genetic networks. Here, a new methodology has been proposed where a hybrid Cuckoo Search-Flower Pollination Algorithm has been implemented with Recurrent Neural Network. Cuckoo Search is used to search the best combination of regulators. Moreover, Flower Pollination Algorithm is applied to optimize the model parameters of the Recurrent Neural Network formalism. Initially, the proposed method is tested on a benchmark large-scale artificial network for both noiseless and noisy data. The results obtained show that the proposed methodology is capable of increasing the inference of correct regulations and decreasing false regulations to a high degree. Secondly, the proposed methodology has been validated against the real-world dataset of the DNA SOS repair network of Escherichia coli. However, the proposed method sacrifices computational time complexity in both cases due to the hybrid optimization process.
| S-EPMC4771889 | biostudies-literature
Project description:BackgroundGlobal warming is attracting attention from policy makers due to its impacts such as floods, extreme weather, increases in temperature by 0.7°C, heat waves, storms, etc. These disasters result in loss of human life and billions of dollars in property. Global warming is believed to be caused by the emissions of greenhouse gases due to human activities including the emissions of carbon dioxide (CO2) from petroleum consumption. Limitations of the previous methods of predicting CO2 emissions and lack of work on the prediction of the Organization of the Petroleum Exporting Countries (OPEC) CO2 emissions from petroleum consumption have motivated this research.Methods/findingsThe OPEC CO2 emissions data were collected from the Energy Information Administration. Artificial Neural Network (ANN) adaptability and performance motivated its choice for this study. To improve effectiveness of the ANN, the cuckoo search algorithm was hybridised with accelerated particle swarm optimisation for training the ANN to build a model for the prediction of OPEC CO2 emissions. The proposed model predicts OPEC CO2 emissions for 3, 6, 9, 12 and 16 years with an improved accuracy and speed over the state-of-the-art methods.ConclusionAn accurate prediction of OPEC CO2 emissions can serve as a reference point for propagating the reorganisation of economic development in OPEC member countries with the view of reducing CO2 emissions to Kyoto benchmarks--hence, reducing global warming. The policy implications are discussed in the paper.
| S-EPMC4549267 | biostudies-literature
Project description:BackgroundEarly lung cancer detection remains a clinical challenge for standard diagnostic biopsies due to insufficient tumor morphological evidence. As epigenetic alterations precede morphological changes, expression alterations of certain imprinted genes could serve as actionable diagnostic biomarkers for malignant lung lesions.ResultsUsing the previously established quantitative chromogenic imprinted gene in situ hybridization (QCIGISH) method, elevated aberrant allelic expression of imprinted genes GNAS, GRB10, SNRPN and HM13 was observed in lung cancers over benign lesions and normal controls, which were pathologically confirmed among histologically stained normal, paracancerous and malignant tissue sections. Based on the differential imprinting signatures, a diagnostic grading model was built on 246 formalin-fixed and paraffin-embedded (FFPE) surgically resected lung tissue specimens, tested against 30 lung cytology and small biopsy specimens, and blindly validated in an independent cohort of 155 patients. The QCIGISH diagnostic model demonstrated 99.1% sensitivity (95% CI 97.5-100.0%) and 92.1% specificity (95% CI 83.5-100.0%) in the blinded validation set. Of particular importance, QCIGISH achieved 97.1% sensitivity (95% CI 91.6-100.0%) for carcinoma in situ to stage IB cancers with 100% sensitivity and 91.7% specificity (95% CI 76.0-100.0%) noted for pulmonary nodules with diameters ≤ 2 cm.ConclusionsOur findings demonstrated the diagnostic value of epigenetic imprinting alterations as highly accurate translational biomarkers for a more definitive diagnosis of suspicious lung lesions.
| S-EPMC8672623 | biostudies-literature
Project description:The advent of high-throughput sequencing technology has resulted in the ability to measure millions of single-nucleotide polymorphisms (SNPs) from thousands of individuals. Although these high-dimensional data have paved the way for better understanding of the genetic architecture of common diseases, they have also given rise to challenges in developing computational methods for learning epistatic relationships among genetic markers. We propose a new method, named cuckoo search epistasis (CSE) for identifying significant epistatic interactions in population-based association studies with a case-control design. This method combines a computationally efficient Bayesian scoring function with an evolutionary-based heuristic search algorithm, and can be efficiently applied to high-dimensional genome-wide SNP data. The experimental results from synthetic data sets show that CSE outperforms existing methods including multifactorial dimensionality reduction and Bayesian epistasis association mapping. In addition, on a real genome-wide data set related to Alzheimer's disease, CSE identified SNPs that are consistent with previously reported results, and show the utility of CSE for application to genome-wide data.
| S-EPMC4023449 | biostudies-literature
Project description:The selection of optimal search effort for air-sea integrated search has become the most concerned issue for maritime search and rescue (MSAR) departments. Helicopters play an important role in maritime search because of their strong maneuverability and hovering ability. In this work, the requirements of maritime search were analyzed, from which a global optimization model with quantitative constraints for vessels and aircraft was developed by setting the least search time as single-objective optimization problem; then the improved Dinkelbach algorithm was used to solve the continuous programming problem, and the discrete mission planning algorithm was used to improve the calculation accuracy of search time and area. A case study shows that the errors in calculating search time and area decrease from 12-18 min to 36 s and from 76.5 to 0.45 n mile2, respectively. The results obtained from the discrete mission planning algorithm can provide better guidance for MASR departments in selecting optimal search scheme.
| S-EPMC8379196 | biostudies-literature
Project description:Importance: The stratification of indeterminate lung nodules is a growing problem, but the burden of lung nodules on healthcare services is not well-described. Manual service evaluation and research cohort curation can be time-consuming and potentially improved by automation. Objective: To automate lung nodule identification in a tertiary cancer centre. Methods: This retrospective cohort study used Electronic Healthcare Records to identify CT reports generated between 31st October 2011 and 24th July 2020. A structured query language/natural language processing tool was developed to classify reports according to lung nodule status. Performance was externally validated. Sentences were used to train machine-learning classifiers to predict concerning nodule features in 2,000 patients. Results: 14,586 patients with lung nodules were identified. The cancer types most commonly associated with lung nodules were lung (39%), neuro-endocrine (38%), skin (35%), colorectal (33%) and sarcoma (33%). Lung nodule patients had a greater proportion of metastatic diagnoses (45 vs. 23%, p < 0.001), a higher mean post-baseline scan number (6.56 vs. 1.93, p < 0.001), and a shorter mean scan interval (4.1 vs. 5.9 months, p < 0.001) than those without nodules. Inter-observer agreement for sentence classification was 0.94 internally and 0.98 externally. Sensitivity and specificity for nodule identification were 93 and 99% internally, and 100 and 100% at external validation, respectively. A linear-support vector machine model predicted concerning sentence features with 94% accuracy. Conclusion: We have developed and validated an accurate tool for automated lung nodule identification that is valuable for service evaluation and research data acquisition.
| S-EPMC8599820 | biostudies-literature
Project description:Integrating heterogeneous biological-inspired strategies and mechanisms into one algorithm can avoid the shortcomings of single algorithm. This article proposes an integrated cuckoo search optimizer (ICSO) for single objective optimization problems, which incorporates the multiple strategies into the cuckoo search (CS) algorithm. The paper also considers the proposal of multi-objective versions of ICSO called MOICSO. The two algorithms presented in this paper are benchmarked by a set of benchmark functions. The comprehensive analysis of the experimental results based on the considered test problems and comparisons with other recent methods illustrate the effectiveness of the proposed integrated mechanism of different search strategies and demonstrate the performance superiority of the proposed algorithm.
| S-EPMC7959647 | biostudies-literature
Project description:This research proposes a new multi-membrane search algorithm (MSA) based on cell biological behavior. Cell secretion protein behavior and cell division and fusion strategy are the main inspirations for the algorithm. In order to verify the performance of the algorithm, we used 19 benchmark functions to compare the MSA test results with MVO, GWO, MFO and ALO. The number of iterations of each algorithm on each benchmark function is 100, the population number is 10, and the running is repeated 50 times, and the average and standard deviation of the results are recorded. Tests show that the MSA is competitive in unimodal benchmark functions and multi-modal benchmark functions, and the results in composite benchmark functions are all superior to MVO, MFO, ALO, and GWO algorithms. This paper also uses MSA to solve two classic engineering problems: welded beam design and pressure vessel design. The result of welded beam design is 1.7252, and the result of pressure vessel design is 5887.7052, which is better than other comparison algorithms. Statistical experiments show that MSA is a high-performance algorithm that is competitive in unimodal and multimodal functions, and its performance in compound functions is significantly better than MVO, MFO, ALO, and GWO algorithms.
| S-EPMC8648127 | biostudies-literature
Project description:The emergence of multiple web pages day by day leads to the development of the semantic web technology. A World Wide Web Consortium (W3C) standard for storing semantic web data is the resource description framework (RDF). To enhance the efficiency in the execution time for querying large RDF graphs, the evolving metaheuristic algorithms become an alternate to the traditional query optimization methods. This paper focuses on the problem of query optimization of semantic web data. An efficient algorithm called adaptive Cuckoo search (ACS) for querying and generating optimal query plan for large RDF graphs is designed in this research. Experiments were conducted on different datasets with varying number of predicates. The experimental results have exposed that the proposed approach has provided significant results in terms of query execution time. The extent to which the algorithm is efficient is tested and the results are documented.
| S-EPMC4158119 | biostudies-other