Fastlin: an ultra-fast program for Mycobacterium tuberculosis complex lineage typing.
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ABSTRACT: Summary
Fastlin is a bioinformatics tool designed for rapid Mycobacterium tuberculosis complex (MTBC) lineage typing. It utilizes an ultra-fast alignment-free approach to detect previously identified barcode single nucleotide polymorphisms associated with specific MTBC lineages. In a comprehensive benchmarking against existing tools, fastlin demonstrated high accuracy and significantly faster running times.Availability and implementation
fastlin is freely available at https://github.com/rderelle/fastlin and can easily be installed using Conda.
SUBMITTER: Derelle R
PROVIDER: S-EPMC10627351 | biostudies-literature | 2023 Nov
REPOSITORIES: biostudies-literature
Publications
fastlin: an ultra-fast program for Mycobacterium tuberculosis complex lineage typing.
Derelle Romain R Lees John J Phelan Jody J Lalvani Ajit A Arinaminpathy Nimalan N Chindelevitch Leonid L
Bioinformatics (Oxford, England) 20231101 11
<h4>Summary</h4>Fastlin is a bioinformatics tool designed for rapid Mycobacterium tuberculosis complex (MTBC) lineage typing. It utilizes an ultra-fast alignment-free approach to detect previously identified barcode single nucleotide polymorphisms associated with specific MTBC lineages. In a comprehensive benchmarking against existing tools, fastlin demonstrated high accuracy and significantly faster running times.<h4>Availability and implementation</h4>fastlin is freely available at https://git ...[more]
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