Selscan 2.0: scanning for sweeps in unphased data.
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ABSTRACT: Summary
Several popular haplotype-based statistics for identifying recent or ongoing positive selection in genomes require knowledge of haplotype phase. Here, we provide an update to selscan which implements a re-definition of these statistics for use in unphased data.Availability and implementation
Source code and binaries are freely available at https://github.com/szpiech/selscan, implemented in C/C++, and supported on Linux, Windows, and MacOS.
SUBMITTER: Szpiech ZA
PROVIDER: S-EPMC10789311 | biostudies-literature | 2024 Jan
REPOSITORIES: biostudies-literature
Publications
selscan 2.0: scanning for sweeps in unphased data.
Bioinformatics (Oxford, England) 20240101 1
<h4>Summary</h4>Several popular haplotype-based statistics for identifying recent or ongoing positive selection in genomes require knowledge of haplotype phase. Here, we provide an update to selscan which implements a re-definition of these statistics for use in unphased data.<h4>Availability and implementation</h4>Source code and binaries are freely available at https://github.com/szpiech/selscan, implemented in C/C++, and supported on Linux, Windows, and MacOS. ...[more]
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