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The genome assembly and annotation of the white-lipped tree pit viper Trimeresurus albolabris.

ABSTRACT: Trimeresurus albolabris, also known as the white-lipped pit viper or white-lipped tree viper, is a highly venomous snake distributed across Southeast Asia and the cause of many snakebite cases. In this study, we report the first whole genome assembly of T. albolabris obtained with next-generation sequencing from a specimen collected in Mengzi, Yunnan, China. After genome sequencing and assembly, the genome of this male T. albolabris individual was 1.51 Gb in length and included 38.42% repeat-element content. Using this genome, 21,695 genes were identified, and 99.17% of genes could be annotated using gene functional databases. Our genome assembly and annotation process was validated using a phylogenetic tree, which included six species and focused on single-copy genes of nuclear genomes. This research will contribute to future studies on Trimeresurus biology and the genetic basis of snake venom.

SUBMITTER: Niu X

PROVIDER: S-EPMC10836062 | biostudies-literature | 2024

REPOSITORIES: biostudies-literature

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The genome assembly and annotation of the white-lipped tree pit viper Trimeresurus albolabris.

Niu Xiaotong X Lv Yakui Y Chen Jin J Feng Yueheng Y Cui Yilin Y Lu Haorong H Liu Hui H

GigaByte (Hong Kong, China) 20240125

Trimeresurus albolabris, also known as the white-lipped pit viper or white-lipped tree viper, is a highly venomous snake distributed across Southeast Asia and the cause of many snakebite cases. In this study, we report the first whole genome assembly of T. albolabris obtained with next-generation sequencing from a specimen collected in Mengzi, Yunnan, China. After genome sequencing and assembly, the genome of this male T. albolabris individual was 1.51 Gb in length and inclu ...[more]

PMID: 38313188

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