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Chromosome-scale genome assembly of Lepus oiostolus (Lepus, Leporidae).

ABSTRACT: Lepus oiostolus (L. oiostolus) is a species endemic to the Qinghai-Tibet Plateau. However, the absence of a reference genome limits genetic studies. Here, we reported a high-quality L. oiostolus genome assembly, with scaffolds anchored to 24 chromosomes and a total assembled length of 2.80 Gb (contig N50 = 64.25 Mb). Genomic annotation uncovered 22,295 protein-coding genes and identified 49.84% of the sequences as transposable elements. Long interspersed nuclear elements (LINEs) constitute a high proportion of the genome. Our study is at the first time to report the chromosome-scale genome for the species of the L. oiostolus. It provides a valuable genomic resource for future research on the evolution of the Leporidae.

SUBMITTER: Feng S

PROVIDER: S-EPMC10858874 | biostudies-literature | 2024 Feb

REPOSITORIES: biostudies-literature

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Chromosome-scale genome assembly of Lepus oiostolus (Lepus, Leporidae).

Feng Shuo S Zhang Yaying Y He Zhaotong Z Xi Erning E Ru Dafu D Liang Jian J Yang Yongzhi Y

Scientific data 20240210 1

Lepus oiostolus (L. oiostolus) is a species endemic to the Qinghai-Tibet Plateau. However, the absence of a reference genome limits genetic studies. Here, we reported a high-quality L. oiostolus genome assembly, with scaffolds anchored to 24 chromosomes and a total assembled length of 2.80 Gb (contig N50 = 64.25 Mb). Genomic annotation uncovered 22,295 protein-coding genes and identified 49.84% of the sequences as transposable elements. Long interspersed nuclear elements (LINEs) constitute a hig ...[more]

PMID: 38341484

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