Dataset Information

A novel signature integrated endoplasmic reticulum stress and apoptosis related genes to predict prognosis for breast cancer.

ABSTRACT:

Background

Breast cancer (BC) is the primary cause of cancer mortality. Herein, we aimed to establish and verify a prognostic model consisting of endoplasmic reticulum stress and apoptosis related genes (ERAGs) to predict patient survival.

Methods

The Cancer Genome Atlas (TCGA) database was used to download gene expression and clinical data to identify the differentially expressed genes (DEGs). Using univariate Cox regression analysis and the Least Absolute Shrinkage and Selection Operator (LASSO)-penalized Cox proportional hazards regression analysis, the prognostic ERAGs were screened. The predictive performance was evaluated using Kaplan-Meier (KM) survival and receiver operating characteristic (ROC) curve analysis. Furthermore, a nomogram model incorporating clinical parameters and risk scores was constructed and subsequently evaluated using ROC and KM analysis. The correlation analysis, mutation analysis, functional enrichment analysis, and immune infiltration analysis were employed to investigate the specific mechanism of ERAGs. We also used Quantitative Real-Time PCR (RT-qPCR) to verify the differential expression of DE-ERAGs between the breast cancer cell line and mammary epithelial cell line.

Results

We constructed a prognostic signature comprising 16 ERAGs. ROC, KM analysis and the nomogram model demonstrated high effectiveness in accurately predicting the overall survival (OS) of BRCA patients. The results of these analysis could provide reference for further mechanism exploration.

Conclusion

We developed and assessed a novel molecular predictive model for breast cancer that focuses on endoplasmic reticulum stress and apoptosis in this study. It is a valuable complement to the existing prognostic prediction models for breast cancer.

SUBMITTER: Fan H

PROVIDER: S-EPMC10966707 | biostudies-literature | 2024 Mar

REPOSITORIES: biostudies-literature

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Publications

A novel signature integrated endoplasmic reticulum stress and apoptosis related genes to predict prognosis for breast cancer.

Fan Hao H Dong Mingjie M Ren Chaomin C Shao Pengfei P Gao Yu Y Wang Yushan Y Feng Yi Y

Heliyon 20240316 6

<h4>Background</h4>Breast cancer (BC) is the primary cause of cancer mortality. Herein, we aimed to establish and verify a prognostic model consisting of endoplasmic reticulum stress and apoptosis related genes (ERAGs) to predict patient survival.<h4>Methods</h4>The Cancer Genome Atlas (TCGA) database was used to download gene expression and clinical data to identify the differentially expressed genes (DEGs). Using univariate Cox regression analysis and the Least Absolute Shrinkage and Selection ...[more]

PMID: 38545172

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Dataset Information

A novel signature integrated endoplasmic reticulum stress and apoptosis related genes to predict prognosis for breast cancer.

Background

Methods

Results

Conclusion

Publications

A novel signature integrated endoplasmic reticulum stress and apoptosis related genes to predict prognosis for breast cancer.

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