Dataset Information

Genome report: chromosome-scale genome assembly of the West Indian fruit fly Anastrepha obliqua (Diptera: Tephritidae).

ABSTRACT: The West Indian fruit fly, Anastrepha obliqua, is a major pest of mango in Central and South America and attacks more than 60 species of host fruits. To support current genetic and genomic research on A. obliqua, we sequenced the genome using high-fidelity long-read sequencing. This resulted in a highly contiguous contig assembly with 90% of the genome in 10 contigs. The contig assembly was placed in a chromosomal context using synteny with a closely related species, Anastrepha ludens, as both are members of the Anastrepha fraterculus group. The resulting assembly represents the five autosomes and the X chromosome which represents 95.9% of the genome, and 199 unplaced contigs representing the remaining 4.1%. Orthology analysis across the structural annotation sets of high quality tephritid genomes demonstrates the gene annotations are robust, and identified genes unique to Anastrepha species that may help define their pestiferous nature that can be used as a starting point for comparative genomics. This genome assembly represents the first of this species and will serve as a foundation for future genetic and genomic research in support of its management as an agricultural pest.

SUBMITTER: Sim SB

PROVIDER: S-EPMC10989853 | biostudies-literature | 2024 Apr

REPOSITORIES: biostudies-literature

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Publications

Genome report: chromosome-scale genome assembly of the West Indian fruit fly Anastrepha obliqua (Diptera: Tephritidae).

Sim Sheina B SB Congrains Carlos C Velasco-Cuervo Sandra M SM Corpuz Renee L RL Kauwe Angela N AN Scheffler Brian B Geib Scott M SM

G3 (Bethesda, Md.) 20240401 4

The West Indian fruit fly, Anastrepha obliqua, is a major pest of mango in Central and South America and attacks more than 60 species of host fruits. To support current genetic and genomic research on A. obliqua, we sequenced the genome using high-fidelity long-read sequencing. This resulted in a highly contiguous contig assembly with 90% of the genome in 10 contigs. The contig assembly was placed in a chromosomal context using synteny with a closely related species, Anastrepha ludens, as both a ...[more]

PMID: 38301265

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Project description:Tephritid fly responses to food-based attractants involve a complex range of food-derived semiochemicals, including ammonia. We performed laboratory and field experiments to compare the attraction of Anastrepha obliqua (Macquart) to ammonia with the attraction to commercial food attractants and torula yeast at a range of pHs. A positive correlation was established between the concentration of ammonia in solution (1.5-150 mM ammonium solution) and gaseous ammonia released by bottle-type traps. This resulted in an asymptotic response in captures of A. obliqua flies in traps that released 99-295 µg ammonia/h. Pairwise comparisons in laboratory cages revealed that traps baited with 150 mM ammonia solution captured similar numbers of A. obliqua as traps baited with Biolure 2C, CeraTrap, and hydrolyzed protein products (Captor, Winner, and Flyral) plus borax, despite the low quantities of ammonia (11-56 µg/h) released from these attractants. Subsequent choice experiment captures in traps containing ammonia solution were similar or higher than those of commercial attractants, with the exception of Winner + borax, but were not correlated with the ammonia released from attractants. Captures of flies in traps containing ammonia solution were increased by the addition of 1% torula yeast or torula yeast alkalized with sodium hydroxide or borax despite differences in the quantities of ammonia released. Fly captures generally increased with increasing alkalization of torula yeast (pH 7.5-9.5). In the field, torula yeast in ammonia solution captured similar numbers of A. obliqua flies as Captor + borax when traps were evaluated after 24 h but not after a 7-day trapping period. Traps baited with ammonia solution or Winner + borax were significantly less attractive than Captor + borax in both field experiments. We conclude that A. obliqua flies are attracted to ammonia solutions of increasing concentration, up to 150 mM, in the absence of other stimuli, whereas attraction to commercial attractants or alkalized torula yeast is not correlated with the release of ammonia.

Project description:Reliable marking systems are critical to the prospective field release of transgenic insect strains. This is to unambiguously distinguish released insects from wild insects in the field that are collected in field traps, and tissue-specific markers, such as those that are sperm-specific, have particular uses such as identifying wild females that have mated with released males. For tephritid fruit flies such as the Mexican fruit fly, Anastrepha ludens, polyubiquitin-regulated fluorescent protein body markers allow transgenic fly identification, and fluorescent protein genes regulated by the spermatocyte-specific ?2-tubulin promoter effectively mark sperm. For sterile male release programs, both marking systems can be made male-specific by linkage to the Y chromosome.An A. ludens wild type strain was genetically transformed with a piggyBac vector, pBXL{PUbnlsEGFP, As?2tub-DsRed.T3}, having the polyubiquitin-regulated EGFP body marker, and the ?2-tubulin-regulated DsRed.T3 sperm-specific marker. Autosomal insertion lines effectively expressed both markers, but a single Y-linked insertion (YEGFP strain) expressed only PUbnlsEGFP. This insertion was remobilized by transposase helper injection, which resulted in three new autosomal insertion lines that expressed both markers. This indicated that the original Y-linked As?2tub-DsRed.T3 marker was functional, but specifically suppressed on the Y chromosome. The PUbnlsEGFP marker remained effective however, and the YEGFP strain was used to create a sexing strain by translocating the wild type allele of the black pupae (bp+) gene onto the Y, which was then introduced into the bp- mutant strain. This allows the mechanical separation of mutant female black pupae from male brown pupae, that can be identified as adults by EGFP fluorescence.A Y-linked insertion of the pBXL{PUbnlsEGFP, As?2tub-DsRed.T3} transformation vector in A. ludens resulted in male-specific expression of the EGFP fluorescent protein marker, and was integrated into a black pupae translocation sexing strain (T(YEGFP/bp+), allowing the identification of male adults when used in sterile male release programs for population control. A unique observation was that expression of the As?2tub-DsRed.T3 sperm-specific marker, which was functional in autosomal insertions, was specifically suppressed in the Y-linked insertion. This may relate to the Y chromosomal regulation of male-specific germ-line genes in Drosophila.

Dataset Information

Genome report: chromosome-scale genome assembly of the West Indian fruit fly Anastrepha obliqua (Diptera: Tephritidae).

Publications

Genome report: chromosome-scale genome assembly of the West Indian fruit fly Anastrepha obliqua (Diptera: Tephritidae).

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