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Structural dynamics of Na+ and Ca2+ interactions with full-size mammalian NCX.


ABSTRACT: Cytosolic Ca2+ and Na+ allosterically regulate Na+/Ca2+ exchanger (NCX) proteins to vary the NCX-mediated Ca2+ entry/exit rates in diverse cell types. To resolve the structure-based dynamic mechanisms underlying the ion-dependent allosteric regulation in mammalian NCXs, we analyze the apo, Ca2+, and Na+-bound species of the brain NCX1.4 variant using hydrogen-deuterium exchange mass spectrometry (HDX-MS) and molecular dynamics (MD) simulations. Ca2+ binding to the cytosolic regulatory domains (CBD1 and CBD2) rigidifies the intracellular regulatory loop (5L6) and promotes its interaction with the membrane domains. Either Na+ or Ca2+ stabilizes the intracellular portions of transmembrane helices TM3, TM4, TM9, TM10, and their connecting loops (3L4 and 9L10), thereby exposing previously unappreciated regulatory sites. Ca2+ or Na+ also rigidifies the palmitoylation domain (TMH2), and neighboring TM1/TM6 bundle, thereby uncovering a structural entity for modulating the ion transport rates. The present analysis provides new structure-dynamic clues underlying the regulatory diversity among tissue-specific NCX variants.

SUBMITTER: Giladi M 

PROVIDER: S-EPMC11021524 | biostudies-literature | 2024 Apr

REPOSITORIES: biostudies-literature

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Structural dynamics of Na<sup>+</sup> and Ca<sup>2+</sup> interactions with full-size mammalian NCX.

Giladi Moshe M   Fojtík Lukáš L   Strauss Tali T   Da'adoosh Benny B   Hiller Reuben R   Man Petr P   Khananshvili Daniel D  

Communications biology 20240416 1


Cytosolic Ca<sup>2+</sup> and Na<sup>+</sup> allosterically regulate Na<sup>+</sup>/Ca<sup>2+</sup> exchanger (NCX) proteins to vary the NCX-mediated Ca<sup>2+</sup> entry/exit rates in diverse cell types. To resolve the structure-based dynamic mechanisms underlying the ion-dependent allosteric regulation in mammalian NCXs, we analyze the apo, Ca<sup>2+</sup>, and Na<sup>+</sup>-bound species of the brain NCX1.4 variant using hydrogen-deuterium exchange mass spectrometry (HDX-MS) and molecular d  ...[more]

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