Machine learning of brain-specific biomarkers from EEG
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PROVIDER: S-EPMC11347073 | biostudies-literature | 2024 Aug
REPOSITORIES: biostudies-literature
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Project description:Objective: The brain age gap estimate (BrainAGE) is the difference between the estimated age and the individual chronological age. BrainAGE was studied primarily using MRI techniques. EEG signals in combination with machine learning (ML) approaches were not commonly used for the human age prediction, and BrainAGE. We investigated whether age-related changes are affecting brain EEG signals, and whether we can predict the chronological age and obtain BrainAGE estimates using a rigorous ML framework with a novel and extensive EEG features extraction. Methods: EEG data were obtained from 468 healthy, mood/anxiety, eating and substance use disorder participants (297 females) from the Tulsa-1000, a naturalistic longitudinal study based on Research Domain Criteria framework. Five sets of preprocessed EEG features across channels and frequency bands were used with different ML methods to predict age. Using a nested-cross-validation (NCV) approach and stack-ensemble learning from EEG features, the predicted age was estimated. The important features and their spatial distributions were deduced. Results: The stack-ensemble age prediction model achieved R2 = 0.37 (0.06), Mean Absolute Error (MAE) = 6.87(0.69) and RMSE = 8.46(0.59) in years. The age and predicted age correlation was r = 0.6. The feature importance revealed that age predictors are spread out across different feature types. The NCV approach produced a reliable age estimation, with features consistent behavior across different folds. Conclusion: Our rigorous ML framework and extensive EEG signal features allow a reliable estimation of chronological age, and BrainAGE. This general framework can be extended to test EEG association with and to predict/study other physiological relevant responses.
| S-EPMC6036180 | biostudies-literature
Project description:There is high demand for techniques to estimate human mental workload during some activities for productivity enhancement or accident prevention. Most studies focus on a single physiological sensing modality and use univariate methods to analyse multi-channel electroencephalography (EEG) data. This paper proposes a new framework that relies on the features of hybrid EEG-functional near-infrared spectroscopy (EEG-fNIRS), supported by machine-learning features to deal with multi-level mental workload classification. Furthermore, instead of the well-used univariate power spectral density (PSD) for EEG recording, we propose using bivariate functional brain connectivity (FBC) features in the time and frequency domains of three bands: delta (0.5-4 Hz), theta (4-7 Hz) and alpha (8-15 Hz). With the assistance of the fNIRS oxyhemoglobin and deoxyhemoglobin (HbO and HbR) indicators, the FBC technique significantly improved classification performance at a 77% accuracy for 0-back vs. 2-back and 83% for 0-back vs. 3-back using a public dataset. Moreover, topographic and heat-map visualisation indicated that the distinguishing regions for EEG and fNIRS showed a difference among the 0-back, 2-back and 3-back test results. It was determined that the best region to assist the discrimination of the mental workload for EEG and fNIRS is different. Specifically, the posterior area performed the best for the posterior midline occipital (POz) EEG in the alpha band and fNIRS had superiority in the right frontal region (AF8).
| S-EPMC9571712 | biostudies-literature
Project description:Machine learning approaches have been fruitfully applied to several neurophysiological signal classification problems. Considering the relevance of emotion in human cognition and behaviour, an important application of machine learning has been found in the field of emotion identification based on neurophysiological activity. Nonetheless, there is high variability in results in the literature depending on the neuronal activity measurement, the signal features and the classifier type. The present work aims to provide new methodological insight into machine learning applied to emotion identification based on electrophysiological brain activity. For this reason, we analysed previously recorded EEG activity measured while emotional stimuli, high and low arousal (auditory and visual) were provided to a group of healthy participants. Our target signal to classify was the pre-stimulus onset brain activity. Classification performance of three different classifiers (LDA, SVM and kNN) was compared using both spectral and temporal features. Furthermore, we also contrasted the performance of static and dynamic (time evolving) approaches. The best static feature-classifier combination was the SVM with spectral features (51.8%), followed by LDA with spectral features (51.4%) and kNN with temporal features (51%). The best dynamic feature classifier combination was the SVM with temporal features (63.8%), followed by kNN with temporal features (63.70%) and LDA with temporal features (63.68%). The results show a clear increase in classification accuracy with temporal dynamic features.
| S-EPMC10603316 | biostudies-literature
Project description:ObjectivesBig data analytics can potentially benefit the assessment and management of complex neurological conditions by extracting information that is difficult to identify manually. In this study, we evaluated the performance of commonly used supervised machine learning algorithms in the classification of patients with traumatic brain injury (TBI) history from those with stroke history and/or normal EEG.MethodsSupport vector machine (SVM) and K-nearest neighbors (KNN) models were generated with a diverse feature set from Temple EEG Corpus for both two-class classification of patients with TBI history from normal subjects and three-class classification of TBI, stroke and normal subjects.ResultsFor two-class classification, an accuracy of 0.94 was achieved in 10-fold cross validation (CV), and 0.76 in independent validation (IV). For three-class classification, 0.85 and 0.71 accuracy were reached in CV and IV respectively. Overall, linear discriminant analysis (LDA) feature selection and SVM models consistently performed well in both CV and IV and for both two-class and three-class classification. Compared to normal control, both TBI and stroke patients showed an overall reduction in coherence and relative PSD in delta frequency, and an increase in higher frequency (alpha, mu, beta and gamma) power. But stroke patients showed a greater degree of change and had additional global decrease in theta power.ConclusionsOur study suggests that EEG data-driven machine learning can be a useful tool for TBI classification.SignificanceOur study provides preliminary evidence that EEG ML algorithm can potentially provide specificity to separate different neurological conditions.
| S-EPMC9513823 | biostudies-literature
Project description:ObjectiveElectroencephalogram (EEG) reactivity is a robust predictor of neurological recovery after cardiac arrest, however interrater-agreement among electroencephalographers is limited. We sought to evaluate the performance of machine learning methods using EEG reactivity data to predict good long-term outcomes in hypoxic-ischemic brain injury.MethodsWe retrospectively reviewed clinical and EEG data of comatose cardiac arrest subjects. Electroencephalogram reactivity was tested within 72 h from cardiac arrest using sound and pain stimuli. A Quantitative EEG (QEEG) reactivity method evaluated changes in QEEG features (EEG spectra, entropy, and frequency features) during the 10 s before and after each stimulation. Good outcome was defined as Cerebral Performance Category of 1-2 at six months. Performance of a random forest classifier was compared against a penalized general linear model (GLM) and expert electroencephalographer review.ResultsFifty subjects were included and sixteen (32%) had good outcome. Both QEEG reactivity methods had comparable performance to expert EEG reactivity assessment for good outcome prediction (mean AUC 0.8 for random forest vs. 0.69 for GLM vs. 0.69 for expert review, respectively; p non-significant).ConclusionsMachine-learning models utilizing quantitative EEG reactivity data can predict long-term outcome after cardiac arrest.SignificanceA quantitative approach to EEG reactivity assessment may support prognostication in cardiac arrest.
| S-EPMC6751020 | biostudies-literature
Project description:COVID-19, a severe respiratory disease caused by a new type of coronavirus SARS-CoV-2, has been spreading all over the world. Patients infected with SARS-CoV-2 may have no pathogenic symptoms, i.e., presymptomatic patients and asymptomatic patients. Both patients could further spread the virus to other susceptible people, thereby making the control of COVID-19 difficult. The two major challenges for COVID-19 diagnosis at present are as follows: (1) patients could share similar symptoms with other respiratory infections, and (2) patients may not have any symptoms but could still spread the virus. Therefore, new biomarkers at different omics levels are required for the large-scale screening and diagnosis of COVID-19. Although some initial analyses could identify a group of candidate gene biomarkers for COVID-19, the previous work still could not identify biomarkers capable for clinical use in COVID-19, which requires disease-specific diagnosis compared with other multiple infectious diseases. As an extension of the previous study, optimized machine learning models were applied in the present study to identify some specific qualitative host biomarkers associated with COVID-19 infection on the basis of a publicly released transcriptomic dataset, which included healthy controls and patients with bacterial infection, influenza, COVID-19, and other kinds of coronavirus. This dataset was first analysed by Boruta, Max-Relevance and Min-Redundancy feature selection methods one by one, resulting in a feature list. This list was fed into the incremental feature selection method, incorporating one of the classification algorithms to extract essential biomarkers and build efficient classifiers and classification rules. The capacity of these findings to distinguish COVID-19 with other similar respiratory infectious diseases at the transcriptomic level was also validated, which may improve the efficacy and accuracy of COVID-19 diagnosis.
| S-EPMC8272456 | biostudies-literature
Project description:Decoding movement related intentions is a key step to implement BMIs. Decoding EEG has been challenging due to its low spatial resolution and signal to noise ratio. Metric learning allows finding a representation of data in a way that captures a desired notion of similarity between data points. In this study, we investigate how metric learning can help finding a representation of the data to efficiently classify EEG movement and pre-movement intentions. We evaluate the effectiveness of the obtained representation by comparing classification the performance of a Support Vector Machine (SVM) as a classifier when trained on the original representation, called Euclidean, and representations obtained with three different metric learning algorithms, including Conditional Entropy Metric Learning (CEML), Neighborhood Component Analysis (NCA), and the Entropy Gap Metric Learning (EGML) algorithms. We examine different types of features, such as time and frequency components, which input to the metric learning algorithm, and both linear and non-linear SVM are applied to compare the classification accuracies on a publicly available EEG data set for two subjects (Subject B and C). Although metric learning algorithms do not increase the classification accuracies, their interpretability using an importance measure we define here, helps understanding data organization and how much each EEG channel contributes to the classification. In addition, among the metric learning algorithms we investigated, EGML shows the most robust performance due to its ability to compensate for differences in scale and correlations among variables. Furthermore, from the observed variations of the importance maps on the scalp and the classification accuracy, selecting an appropriate feature such as clipping the frequency range has a significant effect on the outcome of metric learning and subsequent classification. In our case, reducing the range of the frequency components to 0-5 Hz shows the best interpretability in both Subject B and C and classification accuracy for Subject C. Our experiments support potential benefits of using metric learning algorithms by providing visual explanation of the data projections that explain the inter class separations, using importance. This visualizes the contribution of features that can be related to brain function.
| S-EPMC9283905 | biostudies-literature
Project description:Predictive modeling of neuroimaging data (predictive neuroimaging) for evaluating individual differences in various behavioral phenotypes and clinical outcomes is of growing interest. However, the field is experiencing challenges regarding the interpretability of the results. Approaches to defining the specific contribution of functional connections, regions, or networks in prediction models are urgently needed, which may help explore the underlying mechanisms. In this article, we systematically review the methods and applications for interpreting brain signatures derived from predictive neuroimaging based on a survey of 326 research articles. Strengths, limitations, and the suitable conditions for major interpretation strategies are also deliberated. In-depth discussion of common issues in existing literature and the corresponding recommendations to address these pitfalls are provided. We highly recommend exhaustive validation on the reliability and interpretability of the biomarkers across multiple datasets and contexts, which thereby could translate technical advances in neuroimaging into concrete improvements in precision medicine.
| S-EPMC9880880 | biostudies-literature
Project description:Advances in intracranial electroencephalography (iEEG) and neurophysiology have enabled the study of previously inaccessible brain regions with high fidelity temporal and spatial resolution. Studies of iEEG have revealed a rich neural code subserving healthy brain function and which fails in disease states. Machine learning (ML), a form of artificial intelligence, is a modern tool that may be able to better decode complex neural signals and enhance interpretation of these data. To date, a number of publications have applied ML to iEEG, but clinician awareness of these techniques and their relevance to neurosurgery, has been limited. The present work presents a review of existing applications of ML techniques in iEEG data, discusses the relative merits and limitations of the various approaches, and examines potential avenues for clinical translation in neurosurgery. One-hundred-seven articles examining artificial intelligence applications to iEEG were identified from 3 databases. Clinical applications of ML from these articles were categorized into 4 domains: i) seizure analysis, ii) motor tasks, iii) cognitive assessment, and iv) sleep staging. The review revealed that supervised algorithms were most commonly used across studies and often leveraged publicly available timeseries datasets. We conclude with recommendations for future work and potential clinical applications.
| S-EPMC9271576 | biostudies-literature
Project description:BACKGROUND AND PURPOSE:MR imaging-based modeling of tumor cell density can substantially improve targeted treatment of glioblastoma. Unfortunately, interpatient variability limits the predictive ability of many modeling approaches. We present a transfer learning method that generates individualized patient models, grounded in the wealth of population data, while also detecting and adjusting for interpatient variabilities based on each patient's own histologic data. MATERIALS AND METHODS:We recruited patients with primary glioblastoma undergoing image-guided biopsies and preoperative imaging, including contrast-enhanced MR imaging, dynamic susceptibility contrast MR imaging, and diffusion tensor imaging. We calculated relative cerebral blood volume from DSC-MR imaging and mean diffusivity and fractional anisotropy from DTI. Following image coregistration, we assessed tumor cell density for each biopsy and identified corresponding localized MR imaging measurements. We then explored a range of univariate and multivariate predictive models of tumor cell density based on MR imaging measurements in a generalized one-model-fits-all approach. We then implemented both univariate and multivariate individualized transfer learning predictive models, which harness the available population-level data but allow individual variability in their predictions. Finally, we compared Pearson correlation coefficients and mean absolute error between the individualized transfer learning and generalized one-model-fits-all models. RESULTS:Tumor cell density significantly correlated with relative CBV (r = 0.33, P < .001), and T1-weighted postcontrast (r = 0.36, P < .001) on univariate analysis after correcting for multiple comparisons. With single-variable modeling (using relative CBV), transfer learning increased predictive performance (r = 0.53, mean absolute error = 15.19%) compared with one-model-fits-all (r = 0.27, mean absolute error = 17.79%). With multivariate modeling, transfer learning further improved performance (r = 0.88, mean absolute error = 5.66%) compared with one-model-fits-all (r = 0.39, mean absolute error = 16.55%). CONCLUSIONS:Transfer learning significantly improves predictive modeling performance for quantifying tumor cell density in glioblastoma.
| S-EPMC6474354 | biostudies-other