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Multichannel carotenoid deactivation in photosynthetic light harvesting as identified by an evolutionary target analysis.

ABSTRACT: A new channel of excitation energy deactivation in bacterial light harvesting was recently discovered, which leads to carotenoid triplet population on an ultrafast timescale. Here we show that this mechanism is also active in LH2 of Rhodopseudomonas acidophila through analysis of transient absorption data with an evolutionary target analysis. The algorithm offers flexible testing of kinetic network models with low a priori knowledge requirements. It applies universally to the simultaneous fitting of target state spectra and rate constants to time-wavelength-resolved data. Our best-fit model reproduces correctly the well-known cooling and decay behavior in the S(1) band, but necessitates an additional, clearly distinct singlet state that does not exchange with S(1), promotes ultrafast triplet population and participates in photosynthetic energy transfer.

SUBMITTER: Wohlleben W

PROVIDER: S-EPMC1303100 | biostudies-literature | 2003 Jul

REPOSITORIES: biostudies-literature

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Multichannel carotenoid deactivation in photosynthetic light harvesting as identified by an evolutionary target analysis.

Wohlleben Wendel W Buckup Tiago T Herek Jennifer L JL Cogdell Richard J RJ Motzkus Marcus M

Biophysical journal 20030701 1

A new channel of excitation energy deactivation in bacterial light harvesting was recently discovered, which leads to carotenoid triplet population on an ultrafast timescale. Here we show that this mechanism is also active in LH2 of Rhodopseudomonas acidophila through analysis of transient absorption data with an evolutionary target analysis. The algorithm offers flexible testing of kinetic network models with low a priori knowledge requirements. It applies universally to the simultaneous fittin ...[more]

PMID: 12829499

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Project description:BackgroundPhotosynthetic light-harvesting proteins are the mechanism by which energy enters the marine ecosystem. The dominant prokaryotic photoautotrophs are the cyanobacterial genera Prochlorococcus and Synechococcus that are defined by two distinct light-harvesting systems, chlorophyll-bound protein complexes or phycobilin-bound protein complexes, respectively. Here, we use the Global Ocean Sampling (GOS) Project as a unique and powerful tool to analyze the environmental diversity of photosynthetic light-harvesting genes in relation to available metadata including geographical location and physical and chemical environmental parameters.MethodsAll light-harvesting gene fragments and their metadata were obtained from the GOS database, aligned using ClustalX and classified phylogenetically. Each sequence has a name indicative of its geographic location; subsequent biogeographical analysis was performed by correlating light-harvesting gene budgets for each GOS station with surface chlorophyll concentration.Conclusion/significanceUsing the GOS data, we have mapped the biogeography of light-harvesting genes in marine cyanobacteria on ocean-basin scales and show that an environmental gradient exists in which chlorophyll concentration is correlated to diversity of light-harvesting systems. Three functionally distinct types of light-harvesting genes are defined: (1) the phycobilisome (PBS) genes of Synechococcus; (2) the pcb genes of Prochlorococcus; and (3) the iron-stress-induced (isiA) genes present in some marine Synechococcus. At low chlorophyll concentrations, where nutrients are limited, the Pcb-type light-harvesting system shows greater genetic diversity; whereas at high chlorophyll concentrations, where nutrients are abundant, the PBS-type light-harvesting system shows higher genetic diversity. We interpret this as an environmental selection of specific photosynthetic strategy. Importantly, the unique light-harvesting system isiA is found in the iron-limited, high-nutrient low-chlorophyll region of the equatorial Pacific. This observation demonstrates the ecological importance of isiA genes in enabling marine Synechococcus to acclimate to iron limitation and suggests that the presence of this gene can be a natural biomarker for iron limitation in oceanic environments.

Dataset Information

Multichannel carotenoid deactivation in photosynthetic light harvesting as identified by an evolutionary target analysis.

Publications

Multichannel carotenoid deactivation in photosynthetic light harvesting as identified by an evolutionary target analysis.

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