Genome-wide comparison of differences in the integration sites of interspersed repeats between closely related genomes.
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ABSTRACT:
SUBMITTER: Mamedov I
PROVIDER: S-EPMC135772 | biostudies-literature | 2002 Jul
REPOSITORIES: biostudies-literature
Publications
Genome-wide comparison of differences in the integration sites of interspersed repeats between closely related genomes.
Mamedov Ilgar I Batrak Anastasia A Buzdin Anton A Arzumanyan Elena E Lebedev Yuri Y Sverdlov Eugene D ED
Nucleic acids research 20020701 14
A technique for genome-wide detection of differences in the integration site positions of interspersed repeats in related genomes (DiffIR) is described. The technique is based on a whole- genome selective PCR amplification of the repeats' flanking regions followed by a differential hybridization screening of the arrayed library of the selected amplicons. The technique was successfully applied to the comparison of the integration sites in the human and chimpanzee genomes, allowing us to discover ...[more]
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