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AFM 4.0: a toolbox for DNA microarray analysis.

ABSTRACT: We have developed a series of programs, collectively packaged as Array File Maker 4.0 (AFM), that manipulate and manage DNA microarray data. AFM 4.0 is simple to use, applicable to any organism or microarray, and operates within the familiar confines of Microsoft Excel. Given a database of expression ratios, AFM 4.0 generates input files for clustering, helps prepare colored figures and Venn diagrams, and can uncover aneuploidy in yeast microarray data. AFM 4.0 should be especially useful to laboratories that do not have access to specialized commercial or in-house software.

SUBMITTER: Breitkreutz BJ

PROVIDER: S-EPMC139895 | biostudies-literature | 2001

REPOSITORIES: biostudies-literature

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AFM 4.0: a toolbox for DNA microarray analysis.

Breitkreutz B J BJ Jorgensen P P Breitkreutz A A Tyers M M

Genome biology 20010806 8

We have developed a series of programs, collectively packaged as Array File Maker 4.0 (AFM), that manipulate and manage DNA microarray data. AFM 4.0 is simple to use, applicable to any organism or microarray, and operates within the familiar confines of Microsoft Excel. Given a database of expression ratios, AFM 4.0 generates input files for clustering, helps prepare colored figures and Venn diagrams, and can uncover aneuploidy in yeast microarray data. AFM 4.0 should be especially useful to lab ...[more]

PMID: 11532221

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