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Singlet excited-state dynamics of 5-fluorocytosine and Cytosine: an experimental and computational study.

ABSTRACT: The photophysics of singlet excited 5-fluorocytosine (5FC) was studied in steady-state and time-resolved experiments and theoretically by quantum chemical calculations. Femtosecond transient absorption measurements show that replacement of the C5 hydrogen of cytosine by fluorine increases the excited-state lifetime by 2 orders of magnitude from 720 fs to 73 +/- 4 ps. Experimental evidence indicates that emission in both compounds originates from a single tautomeric form. The lifetime of 5FC is the same within experimental uncertainty in the solvents ethanol and dimethyl sulfoxide. The insensitivity of the S(1) lifetime to the protic nature of the solvent suggests that proton transfer is not the principal quenching mechanism for the excited state. Excited-state calculations were carried out for the amino-keto tautomer of 5FC, the dominant species in polar environments, in order to understand its longer excited-state lifetime. CASSCF and CAS-PT2 calculations of the excited states show that the minimum energy path connecting the minimum of the (1)pi,pi state with the conical intersection responsible for internal conversion has essentially the same energetics for cytosine and 5FC, suggesting that both bases decay nonradiatively by the same mechanism. The dramatic difference in lifetimes may be due to subtle changes along the decay coordinate. A possible reason may be differences in the intramolecular vibrational redistribution rate from the Franck-Condon active, in-plane modes to the out-of-plane modes that must be activated to reach the conical intersection region.

SUBMITTER: Blancafort L

PROVIDER: S-EPMC1660529 | biostudies-literature | 2005 May

REPOSITORIES: biostudies-literature

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Singlet excited-state dynamics of 5-fluorocytosine and Cytosine: an experimental and computational study.

Blancafort Lluís L Cohen Boiko B Hare Patrick M PM Kohler Bern B Robb Michael A MA

The journal of physical chemistry. A 20050501 20

The photophysics of singlet excited 5-fluorocytosine (5FC) was studied in steady-state and time-resolved experiments and theoretically by quantum chemical calculations. Femtosecond transient absorption measurements show that replacement of the C5 hydrogen of cytosine by fluorine increases the excited-state lifetime by 2 orders of magnitude from 720 fs to 73 +/- 4 ps. Experimental evidence indicates that emission in both compounds originates from a single tautomeric form. The lifetime of 5FC is t ...[more]

PMID: 16833777

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Project description:Under excess illumination, photosystem II of plants dissipates excess energy through the quenching of chlorophyll fluorescence in the light harvesting antenna. Various models involving chlorophyll quenching by carotenoids have been proposed, including (i) direct energy transfer from chlorophyll to the low-lying optically forbidden carotenoid S1 state, (ii) formation of a collective quenched chlorophyll-carotenoid S1 excitonic state, (iii) chlorophyll-carotenoid charge separation and recombination, and (iv) chlorophyll-chlorophyll charge separation and recombination. In previous work, the first three processes were mimicked in model systems: in a Zn-phthalocyanine-carotenoid dyad with an amide linker, direct energy transfer was observed by femtosecond transient absorption spectroscopy, whereas in a Zn-phthalocyanine-carotenoid dyad with an amine linker excitonic quenching was demonstrated. Here, we present a transient absorption spectroscopic study on a Zn-phthalocyanine-carotenoid dyad with a phenylene linker. We observe that two quenching phases of the phthalocyanine excited state exist at 77 and 213 ps in addition to an unquenched phase at 2.7 ns. Within our instrument response of ∼100 fs, carotenoid S1 features rise which point at an excitonic quenching mechanism. Strikingly, we observe an additional rise of carotenoid S1 features at 3.6 ps, which shows that a direct energy transfer mechanism in an inverted kinetics regime is also in effect. We assign the 77 ps decay component to excitonic quenching and the 3.6 ps/213 ps rise and decay components to direct energy transfer. Our results indicate that dual quenching mechanisms may be active in the same molecular system, in addition to an unquenched fraction. Computational chemistry results indicate the presence of multiple conformers where one of the dihedral angles of the phenylene linker assumes distinct values. We propose that the parallel quenching pathways and the unquenched fraction result from such conformational subpopulations. Our results suggest that it is possible to switch between different regimes of quenching and nonquenching through a conformational change on the same molecule, offering insights into potential mechanisms used in biological photosynthesis to adapt to light intensity changes on fast time scales.

Dataset Information

Singlet excited-state dynamics of 5-fluorocytosine and Cytosine: an experimental and computational study.

Publications

Singlet excited-state dynamics of 5-fluorocytosine and Cytosine: an experimental and computational study.

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