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Building protein diagrams on the web with the residue-based diagram editor RbDe.


ABSTRACT: The residue-based diagram editor (RbDe) is web-based software that greatly simplifies the construction of schematic diagrams of proteins. Residue-based diagrams display the sequence of a given protein in the context of its secondary and tertiary structure. Such diagrams are frequently used to summarize mutations or sequence features, in the context of the overall topology of a protein. The initial version of RbDe was designed for transmembrane proteins and has enabled many users to create diagrams of large systems such as G protein-coupled receptors or transporters. We present an extended diagram editor that supports other families of proteins. Users can now import custom-diagram layouts, use them to render members of any protein family and generate high-quality output for publication purposes. RbDe is available free over the web, at http://icb.mssm.edu/crt/RbDe

SUBMITTER: Skrabanek L 

PROVIDER: S-EPMC168959 | biostudies-literature | 2003 Jul

REPOSITORIES: biostudies-literature

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Building protein diagrams on the web with the residue-based diagram editor RbDe.

Skrabanek Lucy L   Campagne Fabien F   Weinstein Harel H  

Nucleic acids research 20030701 13


The residue-based diagram editor (RbDe) is web-based software that greatly simplifies the construction of schematic diagrams of proteins. Residue-based diagrams display the sequence of a given protein in the context of its secondary and tertiary structure. Such diagrams are frequently used to summarize mutations or sequence features, in the context of the overall topology of a protein. The initial version of RbDe was designed for transmembrane proteins and has enabled many users to create diagra  ...[more]

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