Analysis of the Saccharomyces cerevisiae proteome with PeptideAtlas.
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ABSTRACT:
SUBMITTER: King NL
PROVIDER: S-EPMC1794584 | biostudies-literature | 2006
REPOSITORIES: biostudies-literature
Publications
Analysis of the Saccharomyces cerevisiae proteome with PeptideAtlas.
King Nichole L NL Deutsch Eric W EW Ranish Jeffrey A JA Nesvizhskii Alexey I AI Eddes James S JS Mallick Parag P Eng Jimmy J Desiere Frank F Flory Mark M Martin Daniel B DB Kim Bong B Lee Hookeun H Raught Brian B Aebersold Ruedi R
Genome biology 20060101 11
We present the Saccharomyces cerevisiae PeptideAtlas composed from 47 diverse experiments and 4.9 million tandem mass spectra. The observed peptides align to 61% of Saccharomyces Genome Database (SGD) open reading frames (ORFs), 49% of the uncharacterized SGD ORFs, 54% of S. cerevisiae ORFs with a Gene Ontology annotation of 'molecular function unknown', and 76% of ORFs with Gene names. We highlight the use of this resource for data mining, construction of high quality lists for targeted proteom ...[more]
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