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A first step in understanding an invasive weed through its genes: an EST analysis of invasive Centaurea maculosa.

ABSTRACT: BACKGROUND:The economic and biological implications of plant invasion are overwhelming; however, the processes by which plants become successful invaders are not well understood. Limited genetic resources are available for most invasive and weedy species, making it difficult to study molecular and genetic aspects that may be associated with invasion. RESULTS:As an initial step towards understanding the molecular mechanisms by which plants become invasive, we have generated a normalized Expressed Sequence Tag (EST) library comprising seven invasive populations of Centaurea maculosa, an invasive aster in North America. Seventy-seven percent of the 4423 unique transcripts showed significant similarity to existing proteins in the NCBI database and could be grouped based on gene ontology assignments. CONCLUSION:The C. maculosa EST library represents an initial step towards looking at gene-specific expression in this species, and will pave the way for creation of other resources such as microarray chips that can help provide a view of global gene expression in invasive C. maculosa and its native counterparts. To our knowledge, this is the first published set of ESTs derived from an invasive weed that will be targeted to study invasive behavior. Understanding the genetic basis of evolution for increased invasiveness in exotic plants is critical to understanding the mechanisms through which exotic invasions occur.

SUBMITTER: Broz AK

PROVIDER: S-EPMC1890287 | biostudies-literature | 2007 May

REPOSITORIES: biostudies-literature

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A first step in understanding an invasive weed through its genes: an EST analysis of invasive Centaurea maculosa.

Broz Amanda K AK Broeckling Corey D CD He Ji J Dai Xinbin X Zhao Patrick X PX Vivanco Jorge M JM

BMC plant biology 20070524

<h4>Background</h4>The economic and biological implications of plant invasion are overwhelming; however, the processes by which plants become successful invaders are not well understood. Limited genetic resources are available for most invasive and weedy species, making it difficult to study molecular and genetic aspects that may be associated with invasion.<h4>Results</h4>As an initial step towards understanding the molecular mechanisms by which plants become invasive, we have generated a norma ...[more]

PMID: 17524143

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Project description:Competition is a major determinant of plant community structure consisting of both species-specific and general interactions, either of which may influence competitive competency and plant abundance and size. In certain cases, competitive competency could arise from altered gene expression and plant function when an individual is confronted with new competitors. We explored competition at the molecular level by hybridizing transcripts from Centaurea maculosa (spotted knapweed), one of North America's most invasive exotic plant species, to an Arabidopsis microarray chip. Centaurea was grown in competition with Festuca idahoensis (Idaho fescue), a native grass species that generally has weak competitive effects against Centaurea; Gaillardia aristata (Indian blanketflower), a native herbaceous species that tends to be a much stronger competitor against Centaurea; or alone (control). The expression of some genes was found to be relatively uninfluenced by the type of plant neighbor, whereas other patterns of gene expression appeared to be more neighbor specific. To our knowledge, these results are the first to identify genes in an invasive plant that are induced or repressed by plant neighbors and provide a new avenue of insight into the molecular aspects of plant competitive ability. Keywords: treated vs.untreated First file, Chip 508 (9-9-05) is preliminary hyb data to see if this cross species hybridization is possible using the OAR27K chip Experiment 1 (chip 508): The Arabidopsis OAR27K gene chip was hybridized with labeled cDNA probes produced from samples of Centaurea RNA at the W.M. Keck Foundation Biotechnology Resource Laboratory, Yale University. The OAR27K gene chip consists of 70-mer oligos representing approximately 27,000 genes from Arabidopsis. Leaf and root samples were reverse-transcribed into cDNA and labeled with different fluorescent dyes (Cy3 and Cy5) using the Genisphere Array 900 kit (Cat No.W500180) (Genisphere, Hatfield PA). Labeled cDNAs were hybridized to the OAR27Kchip using the Advalytix ArrayBooster DNA Microarray Incubator (Advalytix, Boston MA). Approximately 10ug of each sample was used for hybridization.Experiment 2: Hybridization and labeling followed the procedure above, except the experimental control was Centaurea plants grown alone, and the test situations were Centaurea grown with Gaillardia or Festuca neighbors. In each experiment, RNA from Centaurea grown alone was used as the control (labeled with Cy3) and RNA from Centaurea grown with a neighbor was used as the test (labeled with Cy5). Two replicates were performed for each test situation.

Project description:Parthenium weed poses significant threats to cropping systems, socioeconomic structures, and native ecosystems. The pronounced impact is primarily attributed to its rapid and efficient invasion mechanism. Despite that the detrimental effects of Parthenium weed are widely acknowledged, an in-depth scientific comprehension of its invasion mechanism, particularly regarding modifications in structural and functional attributes under natural conditions, is still lacking. To bridge this knowledge gap and formulate effective strategies for alleviating the adverse consequences of Parthenium weed, a study was conducted in the more cultivated and densely populated areas of Punjab, Pakistan. This study was focused on fifteen distinct populations of the star weed (Parthenium hysterophorus L.) to investigate the factors contributing to its widespread distribution in diverse environmental conditions. The results revealed significant variations in growth performance, physiological traits, and internal structures among populations from different habitats. The populations from wastelands exhibited superior growth, with higher accumulation of soluble proteins (TSP) and chlorophyll content (Chl a&b, TChl, Car, and Chl a/b). These populations displayed increased root and stem area, storage parenchyma, vascular bundle area, metaxylem area, and phloem area. Significant leaf modifications included thicker leaves, sclarification around vascular bundles, and widened metaxylem vessels. Roadside populations possessed larger leaf area, enhanced antioxidant activity, increased thickness of leaves in terms of midrib and lamina, and a higher cortical proportion. Populations found in agricultural fields depicted enhanced shoot biomass production, higher levels of chlorophyll b, and an increased total chlorophyll/carotenoid ratio. Additionally, they exhibited increased phloem area in their roots, stems, and leaves, with a thick epidermis only in the stem. All these outcomes of the study revealed explicit structural and functional modifications among P. hysterophorus populations collected from different habitats. These variations were attributed to the environmental variability and could contribute to the widespread distribution of this species. Notably, these findings hold practical significance for agronomists and ecologists, offering valuable insights for the future management of Parthenium weed in novel environments and contributing to the stability of ecosystems.

Dataset Information

A first step in understanding an invasive weed through its genes: an EST analysis of invasive Centaurea maculosa.

Publications

A first step in understanding an invasive weed through its genes: an EST analysis of invasive Centaurea maculosa.

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