Dataset Information

NO orientation and tilting in (nitrosyl)iron(II) deuteroporphyrin IX.

ABSTRACT: To investigate issues concerning the coordination of the nitrosyl ligand in naturally occurring hemes, we report the spectroscopy and X-ray structure of five-coordinate [Fe(Deut)(NO)]. Bonding parameters are comparable with those observed for previously characterized synthetic porphyrin complexes of this type. The asymmetric pattern of the peripheral substitution of the porphyrin core allows us to examine aspects associated with ligand binding and orientation previously unobserved in the symmetrical synthetic porphyrins. The nitrosyl is found to be oriented in the direction of the less basic pyrrole rings. This observed orientation of the NO is considered in reference to those orientations reported in a series of related protein structures. Off-axis tilting, a property associated with ordered (nitrosyl)iron(II) porphyrinates, is also investigated.

SUBMITTER: Wyllie GR

PROVIDER: S-EPMC1892633 | biostudies-literature | 2003 Jul

REPOSITORIES: biostudies-literature

ACCESS DATA

Publications

NO orientation and tilting in (nitrosyl)iron(II) deuteroporphyrin IX.

Wyllie Graeme R A GR Scheidt W Robert WR

Inorganic chemistry 20030701 14

To investigate issues concerning the coordination of the nitrosyl ligand in naturally occurring hemes, we report the spectroscopy and X-ray structure of five-coordinate [Fe(Deut)(NO)]. Bonding parameters are comparable with those observed for previously characterized synthetic porphyrin complexes of this type. The asymmetric pattern of the peripheral substitution of the porphyrin core allows us to examine aspects associated with ligand binding and orientation previously unobserved in the symmetr ...[more]

PMID: 12844295

Similar Datasets

Project description:We use quantitative experimental and theoretical approaches to characterize the vibrational dynamics of the Fe atom in porphyrins designed to model heme protein active sites. Nuclear resonance vibrational spectroscopy (NRVS) yields frequencies, amplitudes, and directions for 57Fe vibrations in a series of ferrous nitrosyl porphyrins, which provide a benchmark for evaluation of quantum chemical vibrational calculations. Detailed normal mode predictions result from DFT calculations on ferrous nitrosyl tetraphenylporphyrin Fe(TPP)(NO), its cation [Fe(TPP)(NO)]+, and ferrous nitrosyl porphine Fe(P)(NO). Differing functionals lead to significant variability in the predicted Fe-NO bond length and frequency for Fe(TPP)(NO). Otherwise, quantitative comparison of calculated and measured Fe dynamics on an absolute scale reveals good overall agreement, suggesting that DFT calculations provide a reliable guide to the character of observed Fe vibrational modes. These include a series of modes involving Fe motion in the plane of the porphyrin, which are rarely identified using infrared and Raman spectroscopies. The NO binding geometry breaks the four-fold symmetry of the Fe environment, and the resulting frequency splittings of the in-plane modes predicted for Fe(TPP)(NO) agree with observations. In contrast to expectations of a simple three-body model, mode energy remains localized on the FeNO fragment for only two modes, an N-O stretch and a mode with mixed Fe-NO stretch and FeNO bend character. Bending of the FeNO unit also contributes to several of the in-plane modes, but no primary FeNO bending mode is identified for Fe(TPP)(NO). Vibrations associated with hindered rotation of the NO and heme doming are predicted at low frequencies, where Fe motion perpendicular to the heme is identified experimentally at 73 and 128 cm-1. Identification of the latter two modes is a crucial first step toward quantifying the reactive energetics of Fe porphyrins and heme proteins.

Dataset Information

NO orientation and tilting in (nitrosyl)iron(II) deuteroporphyrin IX.

Publications

NO orientation and tilting in (nitrosyl)iron(II) deuteroporphyrin IX.

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure

Tweets