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Preliminary investigation of the three-dimensional structure of Salmonella typhimurium uridine phosphorylase in the crystalline state.

ABSTRACT: Uridine phosphorylase (UPh) catalyzes the phosphorolytic cleavage of the C-N glycosidic bond of uridine to ribose 1-phosphate and uracil in the pyrimidine-salvage pathway. The crystal structure of the Salmonella typhimurium uridine phosphorylase (StUPh) has been determined at 2.5 A resolution and refined to an R factor of 22.1% and an Rfree of 27.9%. The hexameric StUPh displays 32 point-group symmetry and utilizes both twofold and threefold non-crystallographic axes. A phosphate is bound at the active site and forms hydrogen bonds to Arg91, Arg30, Thr94 and Gly26 of one monomer and Arg48 of an adjacent monomer. The hexameric StUPh model reveals a close structural relationship to Escherichia coli uridine phosphorylase (EcUPh).

SUBMITTER: Dontsova MV 

PROVIDER: S-EPMC1952443 | biostudies-literature | 2005 Apr

REPOSITORIES: biostudies-literature

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Preliminary investigation of the three-dimensional structure of Salmonella typhimurium uridine phosphorylase in the crystalline state.

Dontsova Maria V MV   Gabdoulkhakov Azat G AG   Molchan Olga K OK   Lashkov Alexandr A AA   Garber Maria B MB   Mironov Alexandr S AS   Zhukhlistova Nadegda E NE   Morgunova Ekaterina Yu EY   Voelter Wolfgang W   Betzel Christian C   Zhang Yang Y   Ealick Steven E SE   Mikhailov Al'bert M AM  

Acta crystallographica. Section F, Structural biology and crystallization communications 20050324 Pt 4

Uridine phosphorylase (UPh) catalyzes the phosphorolytic cleavage of the C-N glycosidic bond of uridine to ribose 1-phosphate and uracil in the pyrimidine-salvage pathway. The crystal structure of the Salmonella typhimurium uridine phosphorylase (StUPh) has been determined at 2.5 A resolution and refined to an R factor of 22.1% and an Rfree of 27.9%. The hexameric StUPh displays 32 point-group symmetry and utilizes both twofold and threefold non-crystallographic axes. A phosphate is bound at the  ...[more]

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