Unknown

Dataset Information

0

Determining promoter location based on DNA structure first-principles calculations.

ABSTRACT: A new method for the prediction of promoter regions based on atomic molecular dynamics simulations of small oligonucleotides has been developed. The method works independently of gene structure conservation and orthology and of the presence of detectable sequence features. Results obtained with our method confirm the existence of a hidden physical code that modulates genome expression.

SUBMITTER: Goni JR 

PROVIDER: S-EPMC2246265 | biostudies-literature | 2007

REPOSITORIES: biostudies-literature

Json Xml
altmetric image

Publications

Determining promoter location based on DNA structure first-principles calculations.

Goñi J Ramon JR   Pérez Alberto A   Torrents David D   Orozco Modesto M  

Genome biology 20070101 12

A new method for the prediction of promoter regions based on atomic molecular dynamics simulations of small oligonucleotides has been developed. The method works independently of gene structure conservation and orthology and of the presence of detectable sequence features. Results obtained with our method confirm the existence of a hidden physical code that modulates genome expression. ...[more]

Similar Datasets

Unknown Electronic structure of quasi-one-dimensional superconductor K2Cr3As3 from first-principles calculations.
| S-EPMC4630611 | biostudies-literature
Unknown Electronic Structure and Optical Property Analysis of Al/Ga-Codoped ZnO through First-Principles Calculations.
| S-EPMC5456706 | biostudies-other
Unknown Enzymatic Kinetic Isotope Effects from First-Principles Path Sampling Calculations.
| S-EPMC4829465 | biostudies-literature
Unknown First-principles calculations of the epsilon phase of solid oxygen.
| S-EPMC6584638 | biostudies-literature
Unknown Schottky barrier formation and band bending revealed by first- principles calculations.
| S-EPMC4464327 | biostudies-literature
Unknown Ru-Catalyzed Steam Methane Reforming: Mechanistic Study from First Principles Calculations.
| S-EPMC6640994 | biostudies-literature
Unknown Probing the intrinsic failure mechanism of fluorinated amorphous carbon film based on the first-principles calculations.
| S-EPMC4371838 | biostudies-other
Unknown First-principles phase diagram calculations for the rocksalt-structure quasibinary systems TiN-ZrN, TiN-HfN and ZrN-HfN.
| S-EPMC5508868 | biostudies-literature
Unknown Piezoelectric, Mechanical and Acoustic Properties of KNaNbOF₅ from First-Principles Calculations.
| S-EPMC5458826 | biostudies-other
Unknown Improving the Quantum Capacitance of Graphene-Based Supercapacitors by the Doping and Co-Doping: First-Principles Calculations.
| S-EPMC6705244 | biostudies-literature