Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza.
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ABSTRACT:
SUBMITTER: Kim H
PROVIDER: S-EPMC2374706 | biostudies-literature | 2008
REPOSITORIES: biostudies-literature
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Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza.
Kim HyeRan H Hurwitz Bonnie B Yu Yeisoo Y Collura Kristi K Gill Navdeep N SanMiguel Phillip P Mullikin James C JC Maher Christopher C Nelson William W Wissotski Marina M Braidotti Michele M Kudrna David D Goicoechea José Luis JL Stein Lincoln L Ware Doreen D Jackson Scott A SA Soderlund Carol C Wing Rod A RA
Genome biology 20080228 2
We describe the establishment and analysis of a genus-wide comparative framework composed of 12 bacterial artificial chromosome fingerprint and end-sequenced physical maps representing the 10 genome types of Oryza aligned to the O. sativa ssp. japonica reference genome sequence. Over 932 Mb of end sequence was analyzed for repeats, simple sequence repeats, miRNA and single nucleotide variations, providing the most extensive analysis of Oryza sequence to date. ...[more]
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2008-08-11 | E-GEOD-11908 | biostudies-arrayexpress
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