PyCogent: a toolkit for making sense from sequence.
Ontology highlight
ABSTRACT:
SUBMITTER: Knight R
PROVIDER: S-EPMC2375001 | biostudies-literature | 2007
REPOSITORIES: biostudies-literature
Publications
PyCogent: a toolkit for making sense from sequence.
Knight Rob R Maxwell Peter P Birmingham Amanda A Carnes Jason J Caporaso J Gregory JG Easton Brett C BC Eaton Michael M Hamady Micah M Lindsay Helen H Liu Zongzhi Z Lozupone Catherine C McDonald Daniel D Robeson Michael M Sammut Raymond R Smit Sandra S Wakefield Matthew J MJ Widmann Jeremy J Wikman Shandy S Wilson Stephanie S Ying Hua H Huttley Gavin A GA
Genome biology 20070101 8
We have implemented in Python the COmparative GENomic Toolkit, a fully integrated and thoroughly tested framework for novel probabilistic analyses of biological sequences, devising workflows, and generating publication quality graphics. PyCogent includes connectors to remote databases, built-in generalized probabilistic techniques for working with biological sequences, and controllers for third-party applications. The toolkit takes advantage of parallel architectures and runs on a range of hardw ...[more]
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