Dataset Information

Analysis of spatial relationships in three dimensions: tools for the study of nerve cell patterning.

ABSTRACT:

Background

Multiple technologies have been brought to bear on understanding the three-dimensional morphology of individual neurons and glia within the brain, but little progress has been made on understanding the rules controlling cellular patterning. We describe new matlab-based software tools, now available to the scientific community, permitting the calculation of spatial statistics associated with 3D point patterns. The analyses are largely derived from the Delaunay tessellation of the field, including the nearest neighbor and Voronoi domain analyses, and from the spatial autocorrelogram.

Results

Our tools enable the analysis of the spatial relationship between neurons within the central nervous system in 3D, and permit the modeling of these fields based on lattice-like simulations, and on simulations of minimal-distance spacing rules. Here we demonstrate the utility of our analysis methods to discriminate between two different simulated neuronal populations.

Conclusion

Together, these tools can be used to reveal the presence of nerve cell patterning and to model its foundation, in turn informing on the potential developmental mechanisms that govern its establishment. Furthermore, in conjunction with analyses of dendritic morphology, they can be used to determine the degree of dendritic coverage within a volume of tissue exhibited by mature nerve cells.

SUBMITTER: Eglen SJ

PROVIDER: S-EPMC2491625 | biostudies-literature | 2008 Jul

REPOSITORIES: biostudies-literature

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Publications

Analysis of spatial relationships in three dimensions: tools for the study of nerve cell patterning.

Eglen Stephen J SJ Lofgreen Dan D DD Raven Mary A MA Reese Benjamin E BE

BMC neuroscience 20080721

<h4>Background</h4>Multiple technologies have been brought to bear on understanding the three-dimensional morphology of individual neurons and glia within the brain, but little progress has been made on understanding the rules controlling cellular patterning. We describe new matlab-based software tools, now available to the scientific community, permitting the calculation of spatial statistics associated with 3D point patterns. The analyses are largely derived from the Delaunay tessellation of t ...[more]

PMID: 18644136

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Dataset Information

Analysis of spatial relationships in three dimensions: tools for the study of nerve cell patterning.

Background

Results

Conclusion

Publications

Analysis of spatial relationships in three dimensions: tools for the study of nerve cell patterning.

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