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Re-assembly of the genome of Francisella tularensis subsp. holarctica OSU18.

ABSTRACT: Francisella tularensis is a highly infectious human intracellular pathogen that is the causative agent of tularemia. It occurs in several major subtypes, including the live vaccine strain holarctica (type B). F. tularensis is classified as category A biodefense agent in part because a relatively small number of organisms can cause severe illness. Three complete genomes of subspecies holarctica have been sequenced and deposited in public archives, of which OSU18 was the first and the only strain for which a scientific publication has appeared. We re-assembled the OSU18 strain using both de novo and comparative assembly techniques, and found that the published sequence has two large inversion mis-assemblies. We generated a corrected assembly of the entire genome along with detailed information on the placement of individual reads within the assembly. This assembly will provide a more accurate basis for future comparative studies of this pathogen.

SUBMITTER: Puiu D

PROVIDER: S-EPMC2561293 | biostudies-literature | 2008

REPOSITORIES: biostudies-literature

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Re-assembly of the genome of Francisella tularensis subsp. holarctica OSU18.

Puiu Daniela D Salzberg Steven L SL

PloS one 20081017 10

Francisella tularensis is a highly infectious human intracellular pathogen that is the causative agent of tularemia. It occurs in several major subtypes, including the live vaccine strain holarctica (type B). F. tularensis is classified as category A biodefense agent in part because a relatively small number of organisms can cause severe illness. Three complete genomes of subspecies holarctica have been sequenced and deposited in public archives, of which OSU18 was the first and the only strain ...[more]

PMID: 18927608

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Hare-to-human transmission of Francisella tularensis subsp. holarctica, Germany.

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Paired-end sequence mapping detects extensive genomic rearrangement and translocation during divergence of Francisella tularensis subsp. tularensis and Francisella tularensis subsp. holarctica populations.

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