Aquatic suction feeding dynamics: insights from computational modelling.
Ontology highlight
ABSTRACT:
SUBMITTER: Van Wassenbergh S
PROVIDER: S-EPMC2575385 | biostudies-literature | 2009 Feb
REPOSITORIES: biostudies-literature
Publications
Aquatic suction feeding dynamics: insights from computational modelling.
Van Wassenbergh Sam S Aerts Peter P
Journal of the Royal Society, Interface 20090201 31
Aquatic suction feeding in vertebrates involves extremely unsteady flow, externally as well as internally of the expanding mouth cavity. Consequently, studying the hydrodynamics involved in this process is a challenging research area, where experimental studies and mathematical models gradually aid our understanding of how suction feeding works mechanically. Especially for flow patterns inside the mouth cavity, our current knowledge is almost entirely based on modelling studies. In the present p ...[more]
Similar Datasets
Project description:Suction feeding is the most commonly used mechanism of prey capture among aquatic vertebrates. Most previous models of the fluid flow caused by suction feeders involve making several untested assumptions. In this paper, a Chimera overset grids approach is used to solve the governing equations of fluid dynamics in order to investigate the assumptions that prey do not interact with the flow and that the flow can be modelled as a one-dimensional flow. Results show that, for small prey, both neglecting the prey and considering prey interaction give similar calculated forces exerted on the prey. However, as the prey item increases in size toward the size of the gape, its effect on the flow becomes more pronounced. This in turn affects both the magnitude of the hydrodynamic forces imparted to the prey and the time when maximum force is delivered. Maximum force is delivered most quickly to intermediate sized prey, about one-third of mouth diameter, and most slowly to prey less than 7 per cent or greater than 67 per cent of mouth diameter. This suggests that the effect of prey size on the timing of suction forces may have substantial consequences for the feeding ecology of suction feeders that are known to prefer prey between 25 and 50 per cent of mouth diameter. Moreover, for a 15 cm fish with a 15 mm gape, assuming a radial one-dimensional flow field can result in underestimating the maximum force exerted on a 5 mm diameter spherical prey 1 gape distance from the mouth by up to 28.7 per cent.
| S-EPMC2842793 | biostudies-other
Project description:This paper reviews the methods, benefits and challenges associated with the adoption and translation of computational fluid dynamics (CFD) modelling within cardiovascular medicine. CFD, a specialist area of mathematics and a branch of fluid mechanics, is used routinely in a diverse range of safety-critical engineering systems, which increasingly is being applied to the cardiovascular system. By facilitating rapid, economical, low-risk prototyping, CFD modelling has already revolutionised research and development of devices such as stents, valve prostheses, and ventricular assist devices. Combined with cardiovascular imaging, CFD simulation enables detailed characterisation of complex physiological pressure and flow fields and the computation of metrics which cannot be directly measured, for example, wall shear stress. CFD models are now being translated into clinical tools for physicians to use across the spectrum of coronary, valvular, congenital, myocardial and peripheral vascular diseases. CFD modelling is apposite for minimally-invasive patient assessment. Patient-specific (incorporating data unique to the individual) and multi-scale (combining models of different length- and time-scales) modelling enables individualised risk prediction and virtual treatment planning. This represents a significant departure from traditional dependence upon registry-based, population-averaged data. Model integration is progressively moving towards 'digital patient' or 'virtual physiological human' representations. When combined with population-scale numerical models, these models have the potential to reduce the cost, time and risk associated with clinical trials. The adoption of CFD modelling signals a new era in cardiovascular medicine. While potentially highly beneficial, a number of academic and commercial groups are addressing the associated methodological, regulatory, education- and service-related challenges.
| S-EPMC4717410 | biostudies-literature
Project description:BackgroundVisual neglect is an attentional deficit typically resulting from parietal cortex lesion and sometimes frontal lesion. Patients fail to attend to objects and events in the visual hemifield contralateral to their lesion during visual search.Methodology/principal findingThe aim of this work was to examine the effects of parietal and frontal lesion in an existing computational model of visual attention and search and simulate visual search behaviour under lesion conditions. We find that unilateral parietal lesion in this model leads to symptoms of visual neglect in simulated search scan paths, including an inhibition of return (IOR) deficit, while frontal lesion leads to milder neglect and to more severe deficits in IOR and perseveration in the scan path. During simulations of search under unilateral parietal lesion, the model's extrastriate ventral stream area exhibits lower activity for stimuli in the neglected hemifield compared to that for stimuli in the normally perceived hemifield. This could represent a computational correlate of differences observed in neuroimaging for unconscious versus conscious perception following parietal lesion.Conclusions/significanceOur results lead to the prediction, supported by effective connectivity evidence, that connections between the dorsal and ventral visual streams may be an important factor in the explanation of perceptual deficits in parietal lesion patients and of conscious perception in general.
| S-EPMC2886104 | biostudies-literature
Project description:Energy flux during nectar feeding is maximized at an intermediate sugar concentration, the value of which depends on the morphology of the feeding apparatus and the modality of fluid feeding. Biomechanical models predict that a shift from capillary-based lapping to suction feeding will lead to a decrease in this optimal sugar concentration. Here, I demonstrate that the four major genera of orchid bees (Apidae: Euglossini) are suction feeders and provide experimental evidence that the feeding optimum for one species, Euglossa imperialis, falls below the optimum for bee taxa that lap.
| S-EPMC1810011 | biostudies-literature
Project description:Most aquatic vertebrates use suction to capture food, relying on rapid expansion of the mouth cavity to accelerate water and food into the mouth. In ray-finned fishes, mouth expansion is both fast and forceful, and therefore requires considerable power. However, the cranial muscles of these fishes are relatively small and may not be able to produce enough power for suction expansion. The axial swimming muscles of these fishes also attach to the feeding apparatus and have the potential to generate mouth expansion. Because of their large size, these axial muscles could contribute substantial power to suction feeding. To determine whether suction feeding is powered primarily by axial muscles, we measured the power required for suction expansion in largemouth bass and compared it to the power capacities of the axial and cranial muscles. Using X-ray reconstruction of moving morphology (XROMM), we generated 3D animations of the mouth skeleton and created a dynamic digital endocast to measure the rate of mouth volume expansion. This time-resolved expansion rate was combined with intraoral pressure recordings to calculate the instantaneous power required for suction feeding. Peak expansion powers for all but the weakest strikes far exceeded the maximum power capacity of the cranial muscles. The axial muscles did not merely contribute but were the primary source of suction expansion power and generated up to 95% of peak expansion power. The recruitment of axial muscle power may have been crucial for the evolution of high-power suction feeding in ray-finned fishes.
| S-EPMC4507191 | biostudies-literature
Project description:High-performance suction feeding is often presented as a classic innovation of ray-finned fishes, likely contributing to their remarkable evolutionary success, whereas sharks, with seemingly less sophisticated jaws, are generally portrayed as morphologically conservative throughout their history. Here, using a combination of computational modeling, physical modeling, and quantitative three-dimensional motion simulation, we analyze the cranial skeleton of one of the earliest known stem elasmobranchs, Tristychius arcuatus from the Middle Mississippian of Scotland. The feeding apparatus is revealed as highly derived, capable of substantial oral expansion, and with clear potential for high-performance suction feeding some 50 million years before the earliest osteichthyan equivalent. This exceptional jaw performance is not apparent from standard measures of ecomorphospace using two-dimensional data. Tristychius signals the emergence of entirely new chondrichthyan ecomorphologies in the aftermath of the end-Devonian extinction and highlights sharks as significant innovators in the early radiation of the modern vertebrate biota.
| S-EPMC6739094 | biostudies-literature
Project description:Enveloped viruses such as the flaviviruses represent a significant burden to human health around the world, with hundreds of millions of people each year affected by dengue alone. In an effort to improve our understanding of the molecular basis for the infective mechanisms of these viruses, extensive computational modelling approaches have been applied to elucidate their conformational dynamics. Multiscale protocols have been developed to simulate flavivirus envelopes in close accordance with biophysical data, in particular derived from cryo-electron microscopy, enabling high-resolution refinement of their structures and elucidation of the conformational changes associated with adaptation both to host environments and to immunological factors such as antibodies. Likewise, integrative modelling efforts combining data from biophysical experiments and from genome sequencing with chemical modification are providing unparalleled insights into the architecture of the previously unresolved nucleocapsid complex. Collectively, this work provides the basis for the future rational design of new antiviral therapeutics and vaccine development strategies targeting enveloped viruses.
| S-EPMC7278654 | biostudies-literature
Project description:Changes to feeding structures are a fundamental component of the vertebrate transition from water to land. Classically, this event has been characterized as a shift from an aquatic, suction-based mode of prey capture involving cranial kinesis to a biting-based feeding system utilizing a rigid skull capable of capturing prey on land. Here we show that a key intermediate, Tiktaalik roseae, was capable of cranial kinesis despite significant restructuring of the skull to facilitate biting and snapping. Lateral sliding joints between the cheek and dermal skull roof, as well as independent mobility between the hyomandibula and palatoquadrate, enable the suspensorium of T. roseae to expand laterally in a manner similar to modern alligator gars and polypterids. This movement can expand the spiracular and opercular cavities during feeding and respiration, which would direct fluid through the feeding apparatus. Detailed analysis of the sutural morphology of T. roseae suggests that the ability to laterally expand the cheek and palate was maintained during the fish-to-tetrapod transition, implying that limited cranial kinesis was plesiomorphic to the earliest limbed vertebrates. Furthermore, recent kinematic studies of feeding in gars demonstrate that prey capture with lateral snapping can synergistically combine both biting and suction, rather than trading off one for the other. A "gar-like" stage in early tetrapod evolution might have been an important intermediate step in the evolution of terrestrial feeding systems by maintaining suction-generation capabilities while simultaneously elaborating a mechanism for biting-based prey capture.
| S-EPMC7896305 | biostudies-literature
Project description:Three-dimensional (3D) computational tissue models can provide a comprehensive description of tissue dynamics at the molecular, cellular and tissue level. Moreover, they can support the development of hypotheses about cellular interactions and about synergies between major signalling pathways. We exemplify these capabilities by simulation of a 3D single-cell-based model of mouse small intestinal crypts. We analyse the impact of lineage specification, distribution and cellular lifespan on clonal competition and study effects of Notch- and Wnt activation on fixation of mutations within the tissue. Based on these results, we predict that experimentally observed synergistic effects between autonomous Notch- and Wnt signalling in triggering intestinal tumourigenesis originate in the suppression of Wnt-dependent secretory lineage specification by Notch, giving rise to an increased fixation probability of Wnt-activating mutations. Our study demonstrates that 3D computational tissue models can support a mechanistic understanding of long-term tissue dynamics under homeostasis and during transformation.
| S-EPMC5014057 | biostudies-literature
Project description:Suction-feeding in fishes is a ubiquitous form of prey capture whose outcome depends both on the movements of the predator and the prey, and on the dynamics of the surrounding fluid, which exerts forces on the two organisms. The inherent complexity of suction-feeding has challenged previous efforts to understand how the feeding strikes are modified when species evolve to feed on different prey types. Here, we use the concept of dynamic similarity, commonly applied to understanding the mechanisms of swimming, flying, walking and aquatic feeding. We characterize the hydrodynamic regimes pertaining to (i) the forward movement of the fish (ram), and (ii) the suction flows for feeding strikes of 71 species of acanthomorph fishes. A discriminant function analysis revealed that feeding strikes of zooplanktivores, generalists and piscivores could be distinguished based on their hydrodynamic regimes. Furthermore, a phylogenetic comparative analysis revealed that there are distinctive hydrodynamic adaptive peaks associated with zooplanktivores, generalists and piscivores. The scaling of dynamic similarity across species, body sizes and feeding guilds in fishes indicates that elementary hydrodynamic principles govern the trophic evolution of suction-feeding in fishes.
| S-EPMC8753175 | biostudies-literature