Dataset Information

Genome-wide analysis of Chlamydophila pneumoniae gene expression at the late stage of infection.

ABSTRACT: Chlamydophila pneumoniae, an obligate intracellular eubacterium, changes its form from a vegetative reticulate body into an infectious elementary body during the late stage of its infection cycle. Comprehension of the molecular events in the morphological change is important to understand the switching mechanism between acute and chronic infection, which is deemed to relate to the pathogenesis of atherosclerosis. Herein, we have attempted to screen genes expressed in the late stage with a genome-wide DNA microarray, resulting in nomination of 17 genes as the late-stage genes. Fourteen of the 17 genes and six other genes predicted as late-stage genes were confirmed to be up-regulated in the late stage with a quantitative reverse transcriptase-polymerase chain reaction. These 20 late-stage genes were classified into two groups by clustering analysis: 'drastically induced' and 'moderately induced' genes. Out of eight drastically induced genes, four contain sigma(28) promoter-like sequences and the other four contain an upstream common sequence. It suggests that besides sigma(28), there are certain up-regulatory mechanisms at the late stage, which may be involved in the chlamydial morphological change and thus pathogenesis.

SUBMITTER: Miura K

PROVIDER: S-EPMC2650627 | biostudies-literature | 2008 Apr

REPOSITORIES: biostudies-literature

ACCESS DATA

Publications

Genome-wide analysis of Chlamydophila pneumoniae gene expression at the late stage of infection.

Miura Koshiro K Toh Hidehiro H Hirakawa Hideki H Sugii Manabu M Murata Masayuki M Nakai Kenta K Tashiro Kosuke K Kuhara Satoru S Azuma Yoshinao Y Shirai Mutsunori M

DNA research : an international journal for rapid publication of reports on genes and genomes 20080124 2

Chlamydophila pneumoniae, an obligate intracellular eubacterium, changes its form from a vegetative reticulate body into an infectious elementary body during the late stage of its infection cycle. Comprehension of the molecular events in the morphological change is important to understand the switching mechanism between acute and chronic infection, which is deemed to relate to the pathogenesis of atherosclerosis. Herein, we have attempted to screen genes expressed in the late stage with a genome ...[more]

PMID: 18222926

Similar Datasets

Project description:The obligate intracellular, gram-negative bacterium, Chlamydophila pneumoniae (Cpn), has impact as an acute and chronic disease-causing pathogen. Little is known about changes in the Cpn transcriptome during its biphasic developmental cycle (the acute infection) and persistence stages that are linked to chronic diseases. To analyze Cpn CWL029 gene expression, we designed a pathogen-specific oligo microarray and optimized the extraction method for pathogen RNA. Throughout the acute infection, ratio expression profiles for each gene were generated using 48 hours post infection as a reference. Based on these profiles, significantly expressed genes were separated into 12 expression clusters using SOM clustering and manually into the ‘early’, ‘mid’, ‘late’ and ‘tardy’ cluster classes. The latter two were differentiated because the ‘tardy’ class showed steadily increasing expression at the end of the cycle. The transcriptome of the Cpn elementary body (EB) and published EB proteomics data were compared to the cluster profile of the acute infection. We found an intriguing association between ‘late’ genes and genes coding for EB proteins, whereas ‘tardy’ genes were mainly associated with genes coding for EB mRNA. It has been published that iron depletion leads to Cpn persistence. We compared the gene expression profiles during iron depletion-mediated persistence with the expression clusters of the acute infection. This led to the finding that establishment of iron depletion-mediated persistence is more likely a mid-cycle arrest in development rather than a completely distinct gene expression pattern. Taken together, here we describe the Cpn transcriptome during the acute infection with ‘late’ genes correlating to EB proteins and ‘tardy’ genes to EB mRNA. Expression profiles during iron mediated-persistence led us to propose the hypothesis that the transcriptomic ‘clock’ is arrested during acute mid-cycle. Keywords: time course, iron, persistence, Chlamydia, Chlamydophila, pneumoniae, recovery, pathogen, life cycle, developmental cycle

Project description:Infectious diseases are the disorders caused by organisms such as bacteria, viruses, fungi, or parasites. Although many of them are permentantly hazardous, a number of them live in and on our bodies and they are normally harmless or even helpful. Under certain circumstances, some organisms may cause diseases and these infectious diseases may be passed directly from person to person or via intermediate vectors including insects and other animals. Dengue virus and Streptococcus pneumoniae are the critical and common sources of infectious diseases. So, it is critical to understand the gene expression profiling and their inferred functions in comparison to the normal and virus infected conditions. Here, we have analyzed the gene expression profiling for dengue hemorrhagic fever, dengue fever, and normal human dataset. Similar to it, streptococcus pneumoniae infectious data were analyzed and both the outcomes were compared. Our study leads to the conclusion that the dengue hemorrhagic fever arises in result to potential change in the gene expression pattern, and the inferred functions obviously belong to the immune system, but also there are some additional potential pathways which are critical signaling pathways. In the case of pneumoniae infection, 19 pathways were enriched, almost all these pathways are associated with the immune system and 17 of the enriched pathways were common with dengue infection except platelet activation and antigen processing and presentation. In terms of the comparative study between dengue virus and Streptococcus pneumoniae infection, we conclude that cell adhesion molecules (CAMs), MAPK signaling pathway, natural killer cell mediated cytotoxicity, regulation of actin cytoskeleton, and cytokine-cytokine receptor interaction are commonly enriched in all the three cases of dengue infection and Streptococcus pneumoniae infection, focal adhesion was enriched between classical dengue fever - dengue hemorrhagic fever, dengue hemorrhagic fever-normal samples, and SP, and antigen processing and presentation and Leukocyte transendothelial migration were enriched in classical dengue fever -normal samples, dengue hemorrhagic fever-normal samples, and Streptococcus pneumoniae infection.

Dataset Information

Genome-wide analysis of Chlamydophila pneumoniae gene expression at the late stage of infection.

Publications

Genome-wide analysis of Chlamydophila pneumoniae gene expression at the late stage of infection.

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure

Tweets