AthaMap, integrating transcriptional and post-transcriptional data.
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ABSTRACT:
SUBMITTER: Bulow L
PROVIDER: S-EPMC2686474 | biostudies-literature | 2009 Jan
REPOSITORIES: biostudies-literature
Publications
AthaMap, integrating transcriptional and post-transcriptional data.
Bülow Lorenz L Engelmann Stefan S Schindler Martin M Hehl Reinhard R
Nucleic acids research 20081008 Database issue
The AthaMap database generates a map of predicted transcription factor binding sites (TFBS) for the whole Arabidopsis thaliana genome. AthaMap has now been extended to include data on post-transcriptional regulation. A total of 403,173 genomic positions of small RNAs have been mapped in the A. thaliana genome. These identify 5772 putative post-transcriptionally regulated target genes. AthaMap tools have been modified to improve the identification of common TFBS in co-regulated genes by subtracti ...[more]
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