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Minimotif miner 2nd release: a database and web system for motif search.


ABSTRACT: Minimotif Miner (MnM) consists of a minimotif database and a web-based application that enables prediction of motif-based functions in user-supplied protein queries. We have revised MnM by expanding the database more than 10-fold to approximately 5000 motifs and standardized the motif function definitions. The web-application user interface has been redeveloped with new features including improved navigation, screencast-driven help, support for alias names and expanded SNP analysis. A sample analysis of prion shows how MnM 2 can be used. Weblink: http://mnm.engr.uconn.edu, weblink for version 1 is http://sms.engr.uconn.edu.

SUBMITTER: Rajasekaran S 

PROVIDER: S-EPMC2686579 | biostudies-literature | 2009 Jan

REPOSITORIES: biostudies-literature

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Minimotif miner 2nd release: a database and web system for motif search.

Rajasekaran Sanguthevar S   Balla Sudha S   Gradie Patrick P   Gryk Michael R MR   Kadaveru Krishna K   Kundeti Vamsi V   Maciejewski Mark W MW   Mi Tian T   Rubino Nicholas N   Vyas Jay J   Schiller Martin R MR  

Nucleic acids research 20081031 Database issue


Minimotif Miner (MnM) consists of a minimotif database and a web-based application that enables prediction of motif-based functions in user-supplied protein queries. We have revised MnM by expanding the database more than 10-fold to approximately 5000 motifs and standardized the motif function definitions. The web-application user interface has been redeveloped with new features including improved navigation, screencast-driven help, support for alias names and expanded SNP analysis. A sample ana  ...[more]

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