Dataset Information

Web API for biology with a workflow navigation system.

ABSTRACT: DNA Data Bank of Japan (DDBJ) provides Web-based systems for biological analysis, called Web APIs for biology (WABI). So far, we have developed over 20 SOAP services and several workflows that consist of a series of method invocations. In this article, we present newly developed services of WABI, that is, REST-based Web services, additional workflows and a workflow navigation system. Each Web service and workflow can be used as a complete service or a building block for programmers to construct more complex information processing systems. The workflow navigation system aims to help non-programming biologists perform analysis tasks by providing next applicable services on Web browsers according to the output of a previously selected service. With this function, users can apply multiple services consecutively only by following links without any programming or manual copy-and-paste operations on Web browsers. The listed services are determined automatically by the system referring to the dictionaries of service categories, the input/output types of services and HTML tags. WABI and the workflow navigation system are freely accessible at http://www.xml.nig.ac.jp/index.html and http://cyclamen.ddbj.nig.ac.jp/, respectively.

SUBMITTER: Kwon Y

PROVIDER: S-EPMC2703950 | biostudies-literature | 2009 Jul

REPOSITORIES: biostudies-literature

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Web API for biology with a workflow navigation system.

Kwon Yeondae Y Shigemoto Yasumasa Y Kuwana Yoshikazu Y Sugawara Hideaki H

Nucleic acids research 20090505 Web Server issue

DNA Data Bank of Japan (DDBJ) provides Web-based systems for biological analysis, called Web APIs for biology (WABI). So far, we have developed over 20 SOAP services and several workflows that consist of a series of method invocations. In this article, we present newly developed services of WABI, that is, REST-based Web services, additional workflows and a workflow navigation system. Each Web service and workflow can be used as a complete service or a building block for programmers to construct ...[more]

PMID: 19417067

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Dataset Information

Web API for biology with a workflow navigation system.

Publications

Web API for biology with a workflow navigation system.

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