Browse
Submit Data
Databases
API
Help

Dataset Information

18 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Synthesis, characterization, and theory of [9]-, [12]-, and [18]cycloparaphenylene: carbon nanohoop structures.

ABSTRACT: The first synthesis and characterization of [9]-, [12]-, and [18]cycloparaphenylene was demonstrated utilizing a novel aromatization reaction. We refer to these fascinating structures as "carbon nanohoops" due to their structural similarity to carbon nanotubes. Additionally, we have utilized computational methods to understand the unique properties of these fully conjugated macrocycles.

SUBMITTER: Jasti R

PROVIDER: S-EPMC2709987 | biostudies-literature |

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Similar Datasets

Cycloparaphenylene as a molecular porous carbon solid with uniform pores exhibiting adsorption-induced softness.

Project description:The molecular carbon nanoring, cycloparaphenylene (CPP), is fascinating as a new class of carbonaceous porous solids with the uniform structure of an all-benzene surface. We explored the feasibility of [12]CPP as a carbon-based porous material and uncovered its unique adsorption properties due to its shape and highly nonpolar surface. Unlike other porous carbon solids, [12]CPP shows stepwise adsorption behaviors sensitive to the functionalities of the guest molecules. In situ powder X-ray diffraction and infrared spectra provided insights into how [12]CPP accommodates the guest molecules with structural deformation retaining its structural periodicity during the whole adsorption process, which exemplifies that this molecular nanoring represents an unprecedented carbon-based soft porous solid.

| S-EPMC6013928 | biostudies-literature

Synthesis and Characterization of Carbon Microbeads.

Project description:We report a microfluidic-based droplet generation platform for synthesizing micron-sized porous carbon microspheres. The setup employs carbon materials such as graphite, carbon nanotubes, graphene, fullerenes, and carbon black as starting materials. Custom composition, structure, and function are achieved through combinations of carbon materials, cross-linkers, and additives along with variations in process parameters. Carbon materials can be assembled into spheres with a mean diameter of units to hundreds of μm with relatively tight size distribution (<25% RSD). Pore structure and size (tens to hundreds of angstrom) can be modulated by incorporating porogen/coporogen dilutants during synthesis. The microbeads have excellent mechanical stability with an elastic modulus of hundreds of MPa. They can sustain high dynamic fluid flow pressures of up to 9000 psi. This work lays the foundation for synthesizing novel tailorable and customizable carbon microbeads. It opens avenues for applying these novel materials for composite and additive manufacturing, energy, life science, and biomedical applications.

| S-EPMC10515371 | biostudies-literature

Carbon Quantum Dot-Incorporated Chitosan Hydrogel for Selective Sensing of Hg<sup>2+</sup> Ions: Synthesis, Characterization, and Density Functional Theory Calculation.

Project description:A carbon quantum dot-based chitosan hydrogel was prepared in this work as a fluorescence sensor for the selective sensing of Hg2+ ions. Among the eight tested metal ions, the prepared hydrogel exhibited remarkable sensing selectivity and sensitivity toward Hg2+. The results demonstrated that a prominent fluorescence quenching at 450 nm was observed in the presence of Hg2+ with a linear response range of 0-100.0 nM and an estimated limit of detection of 9.07 nM. The as-prepared hydrogel demonstrates pH-dependent fluorescence intensity and sensitivity. The highest fluorescence intensity and sensitivity were obtained under pH 5.0. The excellent sensing selectivity could be attributed to a strong interaction between the hydrogel film and Hg2+ ions to form complexes, which provokes an effective electron transfer for fluorescence quenching. Results from density functional theory (DFT) calculation confirm that the interaction energies (ΔIE) of the hydrogel with three toxic metal ions (Hg2+, Cd2+, and Pb2+) are in the following order: Hg2+ > Cd2+ > Pb2+.

| S-EPMC8444287 | biostudies-literature

The Formation of Impossible Rings in Macrocyclooligomerizations for Cyclodepsipeptide Synthesis: The 18-from-12 Paradox.

Project description:A reinvestigation into the macrocyclooligomerization (MCO) of a tetradepsipeptide is reported, uncovering a paradox in which the MCO of depsipeptide monomers can produce "impossible" ring sizes: a 12-atom chain produced the expected 24-membered ring, alongside unexpected 18- and 30-membered cyclic oligomeric depsipeptides (CODs). We report an alternative preparation of authentic 18- and 36-membered macrocycles for this case using a stepwise synthesis that provides definitive analytical characterization for each ring size. Our investigation yields a recharacterization and reassignment of two macrocycles originally reported in this MCO series, along with updated yields and isothermal titration calorimetry data after implementation of new critical protocols for purification and subsequent analysis. Initial studies to probe this mechanistic conundrum are described.

| S-EPMC8611659 | biostudies-literature

Transcript structures in Shewanella sp W3-18-1

Project description:5' RNASeq of mRNA from Shewanella sp W3-18-1 grown aerobically in Luria-Bertani broth (LB) and defined lactate minimal medium

2013-03-21 | GSE45318 | GEO

Transcript structures in Shewanella sp W3-18-1

Project description:5' RNASeq of mRNA from Shewanella sp W3-18-1 grown aerobically in Luria-Bertani broth (LB) and defined lactate minimal medium 5'-end mRNA profiles of mid-log phase bacterial cells growing in LB or lactate medium were generated by next-generation sequencing.

2013-03-21 | E-GEOD-45318 | biostudies-arrayexpress

Protein Folding Structures: Formation of Folding Structures Based on Probability Theory.

Project description:To the best of our knowledge, this is the first study that shows that the X-ray structures of proteins can be dissected into their continuous folding structure units. Each folding structure unit was designed such that both the terminal di- or tri-peptide sequences shared common sequences with the two adjacent folding structure units. To encode the folding structure information of proteins into their amino acid sequences, we proposed 44 kinds of folding elements, which covered all of the amino acids in the protein chains, and defined all folding structure units. The folding element was defined to mean a minimum structural piece, which covered the frame of the main chain of each amino acid in a protein chain. A folding structure unit of a local sequence could be fully characterized by the sequential combination of individual folding elements assigned to each amino acid. The folding structure information showed amino acid preferences in various positions in folding structure units. Folding structure formation proceeded on the basis of probability theory. Strikingly, relative formation ability analysis clearly indicated that we can decode the types and the chain length of folding structure units from the amino acid sequence of a protein.

| S-EPMC6640795 | biostudies-literature

Cycloparaphenylene-Phenalenyl Radical and Its Dimeric Double Nanohoop*.

Project description:The first example of a neutral spin-delocalized carbon-nanoring radical was achieved by integration of the open-shell phenalenyl unit into cycloparaphenylene (CPP). Spin distribution in this hydrocarbon is localized primarily on the phenalenyl segment and partially on the CPP segment as a consequence of steric and electronic effects. The resulting geometry is reminiscent of a diamond ring, with pseudo-perpendicular arrangement of the radial and the planar π-surface. The phenylene rings attached directly to the phenalenyl unit give rise to a steric effect that governs a highly selective dimerization pathway, yielding a giant double nanohoop. Its π-framework made of 158 sp2 -carbon atoms was elucidated by single-crystal X-ray diffraction, which revealed a three-segment CPP-peropyrene-CPP structure. This nanocarbon shows a fluorescence profile characteristic of peropyrene, regardless of which segment gets excited. These results in conjunction with DFT suggest that adjusting the size of the CPP segments in this double nanohoop could deliver donor-acceptor systems.

| S-EPMC8252656 | biostudies-literature

Building carbon structures inside hollow carbon spheres.

Project description:The synthesis and characterization of helical carbon nanofibers (CNFs) contained within a fully confined nanoreactor is described. In particular, hollow carbon spheres (od = ca. 310 nm; wall thickness ca. 20 nm) were infiltrated with Cu ions (1%) to produce CuO particles (<10 nm) and the CuO was converted to Cu particles at temperature of 300 °C. Acetylene was then used as a carbon source to grow helical CNFs within the hollow carbon spheres. The diameter and helicity of the CNFs was influenced by the Cu content within a hollow carbon sphere, the limited Cu sintering inside a sphere as well as the dimensions of the sphere. The procedures employed suggest that the philosophy of building other structures (and molecules) with any elements within confined nanoreactors is possible.

| S-EPMC6650401 | biostudies-other

Murine Tooth Embryoic Molar Germ; E11, 12, 16, 18

Project description:Transcriptional profiling of mouse E14 tooth molar germ comparing E11, 12, 16, 18 tooth molar germ. Goal was to identify unknown genes involved in tooth development,

2020-11-20 | GSE161851 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data