Efficient stochastic simulation of reaction-diffusion processes via direct compilation.

ABSTRACT: We present the Stochastic Simulator Compiler (SSC), a tool for exact stochastic simulations of well-mixed and spatially heterogeneous systems. SSC is the first tool to allow a readable high-level description with spatially heterogeneous simulation algorithms and complex geometries; this permits large systems to be expressed concisely. Meanwhile, direct native-code compilation allows SSC to generate very fast simulations.

SUBMITTER: Lis M 

PROVIDER: S-EPMC2734316 | biostudies-literature | 2009 Sep

REPOSITORIES: biostudies-literature