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Differentiating proteomic biomarkers in breast cancer by laser capture microdissection and MALDI MS.


ABSTRACT: We assessed proteomic patterns in breast cancer using MALDI MS and laser capture microdissected cells. Protein and peptide expression in invasive mammary carcinoma versus normal mammary epithelium and estrogen-receptor positive versus estrogen-receptor negative tumors were compared. Biomarker candidates were identified by statistical analysis and classifiers were developed and validated in blinded test sets. Several of the m/ z features used in the classifiers were identified by LC-MS/MS and two were confirmed by immunohistochemistry.

SUBMITTER: Sanders ME 

PROVIDER: S-EPMC2738605 | biostudies-literature | 2008 Apr

REPOSITORIES: biostudies-literature

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Differentiating proteomic biomarkers in breast cancer by laser capture microdissection and MALDI MS.

Sanders Melinda E ME   Dias Eduardo C EC   Xu Baogang J BJ   Mobley James A JA   Billheimer Dean D   Roder Heinrich H   Grigorieva Julia J   Dowsett Mitchell M   Arteaga Carlos L CL   Caprioli Richard M RM  

Journal of proteome research 20080404 4


We assessed proteomic patterns in breast cancer using MALDI MS and laser capture microdissected cells. Protein and peptide expression in invasive mammary carcinoma versus normal mammary epithelium and estrogen-receptor positive versus estrogen-receptor negative tumors were compared. Biomarker candidates were identified by statistical analysis and classifiers were developed and validated in blinded test sets. Several of the m/ z features used in the classifiers were identified by LC-MS/MS and two  ...[more]

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